Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4853

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4852 and PfGW456L13_4853 are separated by 230 nucleotidesPfGW456L13_4853 and PfGW456L13_4854 are separated by 15 nucleotides PfGW456L13_4852 - Membrane proteins related to metalloendopeptidases, at 5,418,785 to 5,419,606 _4852 PfGW456L13_4853 - hypothetical protein, at 5,419,837 to 5,420,043 _4853 PfGW456L13_4854 - 2-isopropylmalate synthase (EC 2.3.3.13), at 5,420,059 to 5,421,738 _4854 Position (kb) 5419 5420 5421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.848 kb on + strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.849 kb on - strandat 5418.853 kb on + strandat 5418.853 kb on + strandat 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.935 kb on + strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.936 kb on - strand, within PfGW456L13_4852at 5418.957 kb on + strand, within PfGW456L13_4852at 5418.958 kb on - strand, within PfGW456L13_4852at 5419.045 kb on + strand, within PfGW456L13_4852at 5419.171 kb on + strand, within PfGW456L13_4852at 5419.172 kb on - strand, within PfGW456L13_4852at 5419.372 kb on + strand, within PfGW456L13_4852at 5419.373 kb on - strand, within PfGW456L13_4852at 5419.376 kb on + strand, within PfGW456L13_4852at 5419.376 kb on + strand, within PfGW456L13_4852at 5419.377 kb on - strand, within PfGW456L13_4852at 5419.377 kb on - strand, within PfGW456L13_4852at 5419.377 kb on - strand, within PfGW456L13_4852at 5419.377 kb on - strand, within PfGW456L13_4852at 5419.377 kb on - strand, within PfGW456L13_4852at 5419.534 kb on + strandat 5419.534 kb on + strandat 5419.534 kb on + strandat 5419.534 kb on + strandat 5419.535 kb on - strandat 5419.535 kb on - strandat 5419.611 kb on + strandat 5419.612 kb on - strandat 5419.667 kb on + strandat 5419.668 kb on - strandat 5419.668 kb on - strandat 5419.700 kb on + strandat 5419.701 kb on - strandat 5419.812 kb on - strandat 5420.046 kb on + strandat 5420.446 kb on + strand, within PfGW456L13_4854at 5420.446 kb on + strand, within PfGW456L13_4854at 5420.446 kb on + strand, within PfGW456L13_4854at 5420.447 kb on - strand, within PfGW456L13_4854at 5420.447 kb on - strand, within PfGW456L13_4854at 5420.545 kb on + strand, within PfGW456L13_4854at 5420.546 kb on - strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.728 kb on + strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.729 kb on - strand, within PfGW456L13_4854at 5420.896 kb on - strand, within PfGW456L13_4854at 5420.935 kb on + strand, within PfGW456L13_4854at 5420.936 kb on - strand, within PfGW456L13_4854at 5420.936 kb on - strand, within PfGW456L13_4854at 5420.936 kb on - strand, within PfGW456L13_4854at 5420.936 kb on - strand, within PfGW456L13_4854at 5420.936 kb on - strand, within PfGW456L13_4854at 5421.037 kb on + strand, within PfGW456L13_4854at 5421.038 kb on - strand, within PfGW456L13_4854at 5421.038 kb on - strand, within PfGW456L13_4854

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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5,418,848 + +0.3
5,418,848 + -0.8
5,418,848 + +0.7
5,418,848 + +0.1
5,418,848 + -1.8
5,418,848 + +1.3
5,418,848 + +0.1
5,418,848 + -0.6
5,418,848 + +0.7
5,418,848 + -0.6
5,418,848 + -0.6
5,418,848 + -0.2
5,418,848 + +1.5
5,418,848 + -0.5
5,418,848 + -0.0
5,418,848 + +0.2
5,418,848 + +0.8
5,418,848 + +1.3
5,418,849 - -0.2
5,418,849 - -1.0
5,418,849 - -0.6
5,418,849 - +1.7
5,418,849 - +0.9
5,418,849 - -0.2
5,418,849 - +1.2
5,418,849 - +0.4
5,418,849 - +0.1
5,418,849 - -0.0
5,418,853 + -0.1
5,418,853 + -2.4
5,418,935 + PfGW456L13_4852 0.18 -1.3
5,418,935 + PfGW456L13_4852 0.18 +0.1
5,418,935 + PfGW456L13_4852 0.18 -0.6
5,418,935 + PfGW456L13_4852 0.18 -1.4
5,418,935 + PfGW456L13_4852 0.18 +0.8
5,418,935 + PfGW456L13_4852 0.18 -1.9
5,418,935 + PfGW456L13_4852 0.18 +0.6
5,418,935 + PfGW456L13_4852 0.18 -0.6
5,418,936 - PfGW456L13_4852 0.18 -0.3
5,418,936 - PfGW456L13_4852 0.18 -0.6
5,418,936 - PfGW456L13_4852 0.18 +0.4
5,418,936 - PfGW456L13_4852 0.18 -1.2
5,418,936 - PfGW456L13_4852 0.18 -2.1
5,418,936 - PfGW456L13_4852 0.18 +0.6
5,418,936 - PfGW456L13_4852 0.18 -0.5
5,418,936 - PfGW456L13_4852 0.18 +0.6
5,418,957 + PfGW456L13_4852 0.21 +0.3
5,418,958 - PfGW456L13_4852 0.21 +0.4
5,419,045 + PfGW456L13_4852 0.32 -0.7
5,419,171 + PfGW456L13_4852 0.47 -1.7
5,419,172 - PfGW456L13_4852 0.47 +0.8
5,419,372 + PfGW456L13_4852 0.71 +1.5
5,419,373 - PfGW456L13_4852 0.72 +0.2
5,419,376 + PfGW456L13_4852 0.72 -0.1
5,419,376 + PfGW456L13_4852 0.72 +0.3
5,419,377 - PfGW456L13_4852 0.72 +0.3
5,419,377 - PfGW456L13_4852 0.72 -1.7
5,419,377 - PfGW456L13_4852 0.72 -0.1
5,419,377 - PfGW456L13_4852 0.72 +0.1
5,419,377 - PfGW456L13_4852 0.72 -1.7
5,419,534 + +1.7
5,419,534 + -0.4
5,419,534 + -0.3
5,419,534 + -0.6
5,419,535 - +0.5
5,419,535 - +0.1
5,419,611 + -0.8
5,419,612 - -0.1
5,419,667 + +1.0
5,419,668 - +0.2
5,419,668 - -0.8
5,419,700 + -0.1
5,419,701 - +0.1
5,419,812 - -1.4
5,420,046 + -3.7
5,420,446 + PfGW456L13_4854 0.23 -1.7
5,420,446 + PfGW456L13_4854 0.23 -3.0
5,420,446 + PfGW456L13_4854 0.23 -4.2
5,420,447 - PfGW456L13_4854 0.23 -2.6
5,420,447 - PfGW456L13_4854 0.23 -3.9
5,420,545 + PfGW456L13_4854 0.29 -3.7
5,420,546 - PfGW456L13_4854 0.29 -3.4
5,420,728 + PfGW456L13_4854 0.40 -2.4
5,420,728 + PfGW456L13_4854 0.40 -2.6
5,420,728 + PfGW456L13_4854 0.40 -0.3
5,420,728 + PfGW456L13_4854 0.40 -4.1
5,420,728 + PfGW456L13_4854 0.40 -3.2
5,420,728 + PfGW456L13_4854 0.40 -4.1
5,420,728 + PfGW456L13_4854 0.40 -3.0
5,420,728 + PfGW456L13_4854 0.40 -4.0
5,420,729 - PfGW456L13_4854 0.40 -3.8
5,420,729 - PfGW456L13_4854 0.40 -2.2
5,420,729 - PfGW456L13_4854 0.40 -3.0
5,420,729 - PfGW456L13_4854 0.40 -3.6
5,420,729 - PfGW456L13_4854 0.40 -1.1
5,420,729 - PfGW456L13_4854 0.40 -2.3
5,420,729 - PfGW456L13_4854 0.40 -3.4
5,420,729 - PfGW456L13_4854 0.40 -2.7
5,420,729 - PfGW456L13_4854 0.40 -1.9
5,420,729 - PfGW456L13_4854 0.40 -3.0
5,420,729 - PfGW456L13_4854 0.40 -2.1
5,420,896 - PfGW456L13_4854 0.50 -3.4
5,420,935 + PfGW456L13_4854 0.52 -3.4
5,420,936 - PfGW456L13_4854 0.52 -3.7
5,420,936 - PfGW456L13_4854 0.52 -3.1
5,420,936 - PfGW456L13_4854 0.52 -3.7
5,420,936 - PfGW456L13_4854 0.52 -4.2
5,420,936 - PfGW456L13_4854 0.52 -2.9
5,421,037 + PfGW456L13_4854 0.58 -3.8
5,421,038 - PfGW456L13_4854 0.58 -2.3
5,421,038 - PfGW456L13_4854 0.58 -4.1

Or see this region's nucleotide sequence