Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_448

Experiment: Ammonium chloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_447 and PfGW456L13_448 are separated by 55 nucleotidesPfGW456L13_448 and PfGW456L13_449 are separated by 48 nucleotides PfGW456L13_447 - FIG00957011: hypothetical protein, at 511,558 to 512,322 _447 PfGW456L13_448 - hypothetical protein, at 512,378 to 512,506 _448 PfGW456L13_449 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 512,555 to 513,787 _449 Position (kb) 512 513Strain fitness (log2 ratio) -2 -1 0 1at 511.386 kb on - strandat 511.670 kb on - strand, within PfGW456L13_447at 511.720 kb on + strand, within PfGW456L13_447at 511.720 kb on + strand, within PfGW456L13_447at 511.721 kb on - strand, within PfGW456L13_447at 511.721 kb on - strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.266 kb on + strandat 512.364 kb on + strandat 512.411 kb on - strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.483 kb on - strand, within PfGW456L13_448at 512.483 kb on - strand, within PfGW456L13_448at 512.486 kb on + strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.764 kb on + strand, within PfGW456L13_449at 512.764 kb on + strand, within PfGW456L13_449at 512.764 kb on + strand, within PfGW456L13_449at 512.765 kb on - strand, within PfGW456L13_449at 512.783 kb on + strand, within PfGW456L13_449at 512.891 kb on - strand, within PfGW456L13_449at 513.056 kb on + strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
remove
511,386 - -0.6
511,670 - PfGW456L13_447 0.15 +0.2
511,720 + PfGW456L13_447 0.21 +1.1
511,720 + PfGW456L13_447 0.21 -0.0
511,721 - PfGW456L13_447 0.21 +0.1
511,721 - PfGW456L13_447 0.21 -0.5
512,188 + PfGW456L13_447 0.82 -1.6
512,188 + PfGW456L13_447 0.82 -0.0
512,188 + PfGW456L13_447 0.82 +0.3
512,188 + PfGW456L13_447 0.82 -0.3
512,189 - PfGW456L13_447 0.82 +0.4
512,189 - PfGW456L13_447 0.82 -1.5
512,189 - PfGW456L13_447 0.82 -1.5
512,189 - PfGW456L13_447 0.82 -0.6
512,266 + -0.9
512,364 + +0.7
512,411 - PfGW456L13_448 0.26 -1.6
512,470 + PfGW456L13_448 0.71 -0.8
512,470 + PfGW456L13_448 0.71 -0.6
512,470 + PfGW456L13_448 0.71 +0.6
512,470 + PfGW456L13_448 0.71 -0.5
512,470 + PfGW456L13_448 0.71 +1.1
512,471 - PfGW456L13_448 0.72 -1.2
512,471 - PfGW456L13_448 0.72 -0.9
512,471 - PfGW456L13_448 0.72 -1.1
512,482 + PfGW456L13_448 0.81 +0.6
512,482 + PfGW456L13_448 0.81 +0.5
512,482 + PfGW456L13_448 0.81 -1.7
512,482 + PfGW456L13_448 0.81 +0.7
512,482 + PfGW456L13_448 0.81 +0.5
512,482 + PfGW456L13_448 0.81 -0.2
512,482 + PfGW456L13_448 0.81 -0.5
512,482 + PfGW456L13_448 0.81 +0.3
512,482 + PfGW456L13_448 0.81 +1.0
512,483 - PfGW456L13_448 0.81 +1.4
512,483 - PfGW456L13_448 0.81 +0.7
512,486 + PfGW456L13_448 0.84 +0.2
512,487 - PfGW456L13_448 0.84 -2.0
512,487 - PfGW456L13_448 0.84 +1.0
512,487 - PfGW456L13_448 0.84 +0.2
512,487 - PfGW456L13_448 0.84 -0.6
512,487 - PfGW456L13_448 0.84 +0.3
512,487 - PfGW456L13_448 0.84 +0.9
512,487 - PfGW456L13_448 0.84 -0.5
512,487 - PfGW456L13_448 0.84 -1.3
512,764 + PfGW456L13_449 0.17 +0.1
512,764 + PfGW456L13_449 0.17 +0.3
512,764 + PfGW456L13_449 0.17 +0.7
512,765 - PfGW456L13_449 0.17 +0.0
512,783 + PfGW456L13_449 0.18 +0.1
512,891 - PfGW456L13_449 0.27 -1.8
513,056 + PfGW456L13_449 0.41 -0.0
513,057 - PfGW456L13_449 0.41 -0.5
513,057 - PfGW456L13_449 0.41 -0.1
513,057 - PfGW456L13_449 0.41 +0.3
513,428 + PfGW456L13_449 0.71 -0.9
513,428 + PfGW456L13_449 0.71 +0.4
513,428 + PfGW456L13_449 0.71 -0.9
513,428 + PfGW456L13_449 0.71 -2.0
513,428 + PfGW456L13_449 0.71 +1.3
513,428 + PfGW456L13_449 0.71 +1.7
513,429 - PfGW456L13_449 0.71 +0.2
513,429 - PfGW456L13_449 0.71 +0.9
513,429 - PfGW456L13_449 0.71 -0.4
513,429 - PfGW456L13_449 0.71 +0.6
513,429 - PfGW456L13_449 0.71 -0.6
513,429 - PfGW456L13_449 0.71 -0.4

Or see this region's nucleotide sequence