Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_318

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_317 and PfGW456L13_318 are separated by 17 nucleotidesPfGW456L13_318 and PfGW456L13_319 overlap by 48 nucleotidesPfGW456L13_319 and PfGW456L13_320 overlap by 11 nucleotides PfGW456L13_317 - Imidazolonepropionase (EC 3.5.2.7) (from data), at 371,030 to 372,235 _317 PfGW456L13_318 - Histidine transport protein (permease), at 372,253 to 373,659 _318 PfGW456L13_319 - hypothetical protein, at 373,612 to 373,779 _319 PfGW456L13_320 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 373,769 to 375,301 _320 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1at 371.380 kb on - strand, within PfGW456L13_317at 371.563 kb on + strand, within PfGW456L13_317at 371.563 kb on + strand, within PfGW456L13_317at 371.604 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.684 kb on - strand, within PfGW456L13_317at 371.684 kb on - strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.326 kb on + strandat 372.326 kb on + strandat 372.392 kb on + strandat 372.447 kb on - strand, within PfGW456L13_318at 372.605 kb on + strand, within PfGW456L13_318at 372.605 kb on + strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.938 kb on - strand, within PfGW456L13_318at 373.012 kb on - strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.323 kb on + strand, within PfGW456L13_318at 373.323 kb on + strand, within PfGW456L13_318at 373.373 kb on + strand, within PfGW456L13_318at 373.373 kb on + strand, within PfGW456L13_318at 373.373 kb on + strand, within PfGW456L13_318at 373.374 kb on - strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.514 kb on + strand, within PfGW456L13_318at 373.514 kb on + strand, within PfGW456L13_318at 373.514 kb on + strand, within PfGW456L13_318at 373.565 kb on + strandat 373.565 kb on + strandat 373.565 kb on + strandat 373.565 kb on + strandat 373.566 kb on - strandat 373.566 kb on - strandat 373.611 kb on + strandat 373.611 kb on + strandat 373.611 kb on + strandat 373.612 kb on - strandat 373.612 kb on - strandat 373.671 kb on - strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.770 kb on + strandat 373.770 kb on + strandat 373.770 kb on + strandat 373.771 kb on - strandat 373.771 kb on - strandat 373.771 kb on - strandat 373.777 kb on + strandat 373.778 kb on - strandat 373.875 kb on + strandat 373.876 kb on - strandat 374.233 kb on + strand, within PfGW456L13_320at 374.234 kb on - strand, within PfGW456L13_320at 374.393 kb on + strand, within PfGW456L13_320at 374.471 kb on + strand, within PfGW456L13_320at 374.472 kb on - strand, within PfGW456L13_320at 374.472 kb on - strand, within PfGW456L13_320

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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371,380 - PfGW456L13_317 0.29 -0.9
371,563 + PfGW456L13_317 0.44 +0.4
371,563 + PfGW456L13_317 0.44 -1.4
371,604 + PfGW456L13_317 0.48 +0.5
371,683 + PfGW456L13_317 0.54 -0.1
371,683 + PfGW456L13_317 0.54 -0.8
371,683 + PfGW456L13_317 0.54 +0.0
371,684 - PfGW456L13_317 0.54 +0.3
371,684 - PfGW456L13_317 0.54 -0.6
371,685 + PfGW456L13_317 0.54 -1.1
371,685 + PfGW456L13_317 0.54 -1.4
371,685 + PfGW456L13_317 0.54 +0.2
371,686 - PfGW456L13_317 0.54 -1.2
371,686 - PfGW456L13_317 0.54 -2.7
371,686 - PfGW456L13_317 0.54 +0.8
371,686 - PfGW456L13_317 0.54 +0.9
371,686 - PfGW456L13_317 0.54 +0.3
371,686 - PfGW456L13_317 0.54 +0.1
371,686 - PfGW456L13_317 0.54 -0.7
371,686 - PfGW456L13_317 0.54 -2.1
371,686 - PfGW456L13_317 0.54 -0.8
371,707 - PfGW456L13_317 0.56 -2.2
371,707 - PfGW456L13_317 0.56 -0.9
371,707 - PfGW456L13_317 0.56 +1.2
372,249 + -0.3
372,249 + +0.5
372,249 + -0.1
372,249 + +0.9
372,249 + +0.4
372,249 + -0.5
372,250 - +0.4
372,250 - +0.0
372,250 - +0.3
372,250 - +1.0
372,250 - -0.2
372,250 - +0.5
372,250 - +0.4
372,326 + +0.7
372,326 + -0.5
372,392 + +0.2
372,447 - PfGW456L13_318 0.14 -0.4
372,605 + PfGW456L13_318 0.25 +0.9
372,605 + PfGW456L13_318 0.25 +0.0
372,606 - PfGW456L13_318 0.25 +1.2
372,606 - PfGW456L13_318 0.25 +0.2
372,606 - PfGW456L13_318 0.25 +0.8
372,606 - PfGW456L13_318 0.25 +0.7
372,914 + PfGW456L13_318 0.47 -0.5
372,914 + PfGW456L13_318 0.47 -0.2
372,914 + PfGW456L13_318 0.47 +0.4
372,914 + PfGW456L13_318 0.47 +1.5
372,914 + PfGW456L13_318 0.47 -0.5
372,914 + PfGW456L13_318 0.47 +0.3
372,915 - PfGW456L13_318 0.47 -0.3
372,915 - PfGW456L13_318 0.47 +0.4
372,915 - PfGW456L13_318 0.47 +0.0
372,938 - PfGW456L13_318 0.49 +1.0
373,012 - PfGW456L13_318 0.54 +0.1
373,319 + PfGW456L13_318 0.76 -0.1
373,319 + PfGW456L13_318 0.76 +1.3
373,319 + PfGW456L13_318 0.76 -0.1
373,319 + PfGW456L13_318 0.76 -0.2
373,319 + PfGW456L13_318 0.76 -0.6
373,319 + PfGW456L13_318 0.76 -0.9
373,319 + PfGW456L13_318 0.76 +0.0
373,319 + PfGW456L13_318 0.76 +0.0
373,319 + PfGW456L13_318 0.76 +0.3
373,319 + PfGW456L13_318 0.76 -0.7
373,319 + PfGW456L13_318 0.76 -0.9
373,319 + PfGW456L13_318 0.76 -0.1
373,319 + PfGW456L13_318 0.76 -0.3
373,320 - PfGW456L13_318 0.76 -1.5
373,320 - PfGW456L13_318 0.76 +0.2
373,320 - PfGW456L13_318 0.76 +0.1
373,320 - PfGW456L13_318 0.76 -1.2
373,320 - PfGW456L13_318 0.76 -0.3
373,320 - PfGW456L13_318 0.76 +0.0
373,320 - PfGW456L13_318 0.76 -0.8
373,320 - PfGW456L13_318 0.76 -0.1
373,320 - PfGW456L13_318 0.76 -0.0
373,320 - PfGW456L13_318 0.76 -1.2
373,320 - PfGW456L13_318 0.76 -1.7
373,323 + PfGW456L13_318 0.76 +0.6
373,323 + PfGW456L13_318 0.76 -2.1
373,373 + PfGW456L13_318 0.80 +0.6
373,373 + PfGW456L13_318 0.80 +0.9
373,373 + PfGW456L13_318 0.80 -1.3
373,374 - PfGW456L13_318 0.80 +0.5
373,412 + PfGW456L13_318 0.82 -0.5
373,412 + PfGW456L13_318 0.82 -0.6
373,412 + PfGW456L13_318 0.82 -0.4
373,412 + PfGW456L13_318 0.82 +0.3
373,412 + PfGW456L13_318 0.82 +0.4
373,412 + PfGW456L13_318 0.82 -0.4
373,413 - PfGW456L13_318 0.82 +0.1
373,413 - PfGW456L13_318 0.82 -0.2
373,413 - PfGW456L13_318 0.82 +0.1
373,413 - PfGW456L13_318 0.82 +0.1
373,413 - PfGW456L13_318 0.82 +0.3
373,514 + PfGW456L13_318 0.90 +0.0
373,514 + PfGW456L13_318 0.90 -2.7
373,514 + PfGW456L13_318 0.90 -0.2
373,565 + +0.2
373,565 + -0.4
373,565 + -0.4
373,565 + -1.1
373,566 - +0.1
373,566 - -0.3
373,611 + -0.5
373,611 + +1.0
373,611 + +0.7
373,612 - +1.3
373,612 - -0.6
373,671 - PfGW456L13_319 0.35 -2.7
373,674 + PfGW456L13_319 0.37 -1.4
373,674 + PfGW456L13_319 0.37 +0.4
373,674 + PfGW456L13_319 0.37 -0.3
373,674 + PfGW456L13_319 0.37 -0.8
373,675 - PfGW456L13_319 0.38 -0.6
373,675 - PfGW456L13_319 0.38 -0.1
373,675 - PfGW456L13_319 0.38 +0.2
373,675 - PfGW456L13_319 0.38 -1.4
373,770 + +1.4
373,770 + +1.0
373,770 + -0.1
373,771 - +0.4
373,771 - -0.7
373,771 - -0.1
373,777 + +0.3
373,778 - +1.1
373,875 + +0.6
373,876 - -0.6
374,233 + PfGW456L13_320 0.30 -1.0
374,234 - PfGW456L13_320 0.30 -0.3
374,393 + PfGW456L13_320 0.41 +0.3
374,471 + PfGW456L13_320 0.46 +0.3
374,472 - PfGW456L13_320 0.46 -0.0
374,472 - PfGW456L13_320 0.46 +0.1

Or see this region's nucleotide sequence