Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1153

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
1,279,806	+		PfGW456L13_1151	0.65	-1.6
1,279,806	+		PfGW456L13_1151	0.65	-4.4
1,279,806	+		PfGW456L13_1151	0.65	-2.9
1,279,807	-		PfGW456L13_1151	0.65	-3.4
1,279,807	-		PfGW456L13_1151	0.65	-1.5
1,279,819	+		PfGW456L13_1151	0.67	-4.2
1,279,819	+		PfGW456L13_1151	0.67	-3.6
1,279,820	-		PfGW456L13_1151	0.67	-2.4
1,279,820	-		PfGW456L13_1151	0.67	-3.7
1,279,820	-		PfGW456L13_1151	0.67	-2.7
1,279,978	+				-4.0
1,280,192	+				+1.2
1,280,192	+				-1.3
1,280,193	-				+0.6
1,280,449	+				+1.3
1,280,450	-				+1.1
1,280,516	+				+1.0
1,280,516	+				-1.0
1,280,517	-				-1.5
1,280,517	-				+1.1
1,280,535	+				-0.9
1,280,536	-				-0.8
1,280,536	-				+1.3
1,280,536	-				+0.7
1,280,657	-				+0.3
1,280,716	-				-1.6
1,280,731	+				-0.3
1,280,737	+				+0.7
1,280,747	+				-0.3
1,280,748	-				-0.7
1,280,748	-				-0.9
1,280,767	+				-2.0
1,280,810	+				-0.0
1,280,810	+				-1.7
1,280,810	+				-1.7
1,280,811	-				-1.7
1,280,896	-				-3.3
1,280,896	-				+0.1
1,280,957	-		PfGW456L13_1153	0.12	-1.0
1,280,984	+		PfGW456L13_1153	0.14	-2.2
1,280,984	+		PfGW456L13_1153	0.14	-1.5
1,280,984	+		PfGW456L13_1153	0.14	-0.7
1,280,985	-		PfGW456L13_1153	0.14	-1.3
1,281,030	+		PfGW456L13_1153	0.16	-1.7
1,281,030	+		PfGW456L13_1153	0.16	-0.9
1,281,031	-		PfGW456L13_1153	0.16	-1.2
1,281,031	-		PfGW456L13_1153	0.16	+1.8
1,281,031	-		PfGW456L13_1153	0.16	-0.4
1,281,031	-		PfGW456L13_1153	0.16	-1.9
1,281,116	+		PfGW456L13_1153	0.21	-0.4
1,281,116	+		PfGW456L13_1153	0.21	-3.5
1,281,117	-		PfGW456L13_1153	0.21	-1.5
1,281,117	-		PfGW456L13_1153	0.21	-2.6
1,281,117	-		PfGW456L13_1153	0.21	-0.5
1,281,185	+		PfGW456L13_1153	0.25	-0.6
1,281,186	-		PfGW456L13_1153	0.25	-0.6
1,281,302	+		PfGW456L13_1153	0.31	-1.4
1,281,302	+		PfGW456L13_1153	0.31	-2.0
1,281,302	+		PfGW456L13_1153	0.31	-1.9
1,281,303	-		PfGW456L13_1153	0.31	-0.9
1,281,303	-		PfGW456L13_1153	0.31	-0.2
1,281,303	-		PfGW456L13_1153	0.31	+0.5
1,281,303	-		PfGW456L13_1153	0.31	+0.1
1,281,303	-		PfGW456L13_1153	0.31	-1.7
1,281,529	+		PfGW456L13_1153	0.44	-1.7
1,281,529	+		PfGW456L13_1153	0.44	-1.9
1,281,530	-		PfGW456L13_1153	0.44	-0.9
1,281,530	-		PfGW456L13_1153	0.44	-0.7
1,281,537	+		PfGW456L13_1153	0.44	-0.6
1,281,687	-		PfGW456L13_1153	0.53	-1.6
1,281,687	-		PfGW456L13_1153	0.53	-0.8
1,281,687	-		PfGW456L13_1153	0.53	-1.9
1,281,774	+		PfGW456L13_1153	0.57	-1.6
1,281,774	+		PfGW456L13_1153	0.57	-0.6
1,281,775	-		PfGW456L13_1153	0.57	-2.4
1,281,830	+		PfGW456L13_1153	0.60	-3.3
1,281,830	+		PfGW456L13_1153	0.60	-1.1
1,281,830	+		PfGW456L13_1153	0.60	-0.9
1,281,863	+		PfGW456L13_1153	0.62	+0.2
1,281,863	+		PfGW456L13_1153	0.62	-0.9
1,281,984	-		PfGW456L13_1153	0.69	+0.3
1,282,042	+		PfGW456L13_1153	0.72	-2.3
1,282,043	-		PfGW456L13_1153	0.72	-1.0
1,282,043	-		PfGW456L13_1153	0.72	-0.2
1,282,055	+		PfGW456L13_1153	0.73	-2.2
1,282,055	+		PfGW456L13_1153	0.73	-0.4
1,282,056	-		PfGW456L13_1153	0.73	+0.1
1,282,056	-		PfGW456L13_1153	0.73	-2.6
1,282,313	+		PfGW456L13_1153	0.87	+0.3
1,282,314	-		PfGW456L13_1153	0.87	-1.0
1,282,314	-		PfGW456L13_1153	0.87	-2.6
1,282,337	+		PfGW456L13_1153	0.89	-0.6
1,282,337	+		PfGW456L13_1153	0.89	-1.5
1,282,338	-				+1.4
1,282,436	+				-0.0
1,282,436	+				-2.3
1,282,436	+				-3.4
1,282,436	+				-1.2
1,282,437	-				-0.0
1,282,459	+				-2.3
1,282,476	+				-1.0
1,282,476	+				-1.6
1,282,510	+				-2.1
1,282,539	-				+0.3
1,282,539	-				-1.2
1,282,541	+				-0.8
1,282,541	+				+0.7
1,282,541	+				+1.2
1,282,541	+				-0.7
1,282,541	+				-0.9
1,282,541	+				-2.4
1,282,541	+				+0.5
1,282,541	+				+2.0
1,282,541	+				+0.4
1,282,541	+				-0.4
1,282,541	+				-0.8
1,282,541	+				+0.8
1,282,541	+				-0.5
1,282,542	-				-0.4
1,282,542	-				+0.1
1,282,542	-				-1.7
1,282,542	-				-0.9
1,282,542	-				+1.1
1,282,542	-				+1.0
1,282,556	+				-0.4
1,282,557	-				-2.0
1,282,557	-				-1.7
1,282,557	-				+0.7
1,282,603	+				-1.5
1,282,604	-				+0.7
1,282,647	-				+0.2
1,282,692	-				+0.5
1,282,692	-				-0.0
1,282,711	-				+0.4
1,282,758	+				+0.3
1,282,758	+				+0.2
1,282,758	+				-0.1
1,282,759	-				+1.2
1,282,817	+				-0.4
1,282,817	+				+0.1
1,282,817	+				-2.0
1,282,817	+				+0.8
1,282,817	+				-0.2
1,282,817	+				+0.5
1,282,817	+				-0.6
1,282,817	+				+0.5
1,282,817	+				-0.0
1,282,818	-				-2.1
1,282,818	-				+1.0
1,282,818	-				-0.6
1,282,818	-				-2.5
1,282,818	-				+0.6
1,282,818	-				-0.5
1,282,818	-				+1.0
1,282,818	-				-0.9
1,282,818	-				-1.2
1,282,818	-				+1.1
1,282,818	-				-0.7
1,282,818	-				-0.9
1,282,818	-				-2.5
1,282,895	+		PfGW456L13_1154	0.12	+0.0
1,282,895	+		PfGW456L13_1154	0.12	+0.4
1,282,896	-		PfGW456L13_1154	0.12	+0.8
1,282,907	+		PfGW456L13_1154	0.13	+0.6
1,282,946	+		PfGW456L13_1154	0.16	+0.6
1,282,946	+		PfGW456L13_1154	0.16	+0.0
1,282,947	-		PfGW456L13_1154	0.16	+1.0
1,282,947	-		PfGW456L13_1154	0.16	-0.3
1,282,947	-		PfGW456L13_1154	0.16	+0.3
1,282,947	-		PfGW456L13_1154	0.16	-1.5
1,282,947	-		PfGW456L13_1154	0.16	-0.3
1,282,956	-		PfGW456L13_1154	0.17	+0.4
1,282,956	-		PfGW456L13_1154	0.17	-0.5
1,282,982	+		PfGW456L13_1154	0.19	-0.2
1,282,982	+		PfGW456L13_1154	0.19	-0.3
1,282,983	-		PfGW456L13_1154	0.19	+1.4
1,282,986	-		PfGW456L13_1154	0.19	-0.2
1,283,297	+		PfGW456L13_1154	0.43	-0.5
1,283,297	+		PfGW456L13_1154	0.43	-0.0
1,283,454	-		PfGW456L13_1154	0.55	-2.4
1,283,537	+		PfGW456L13_1154	0.62	-1.4
1,283,537	+		PfGW456L13_1154	0.62	+0.5
1,283,537	+		PfGW456L13_1154	0.62	+0.2
1,283,537	+		PfGW456L13_1154	0.62	+1.1
1,283,537	+		PfGW456L13_1154	0.62	-0.5
1,283,538	-		PfGW456L13_1154	0.62	-1.0
1,283,538	-		PfGW456L13_1154	0.62	-0.2
1,283,538	-		PfGW456L13_1154	0.62	-0.7
1,283,538	-		PfGW456L13_1154	0.62	-0.8