Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS22035

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS22030 and UW163_RS22035 are separated by 87 nucleotidesUW163_RS22035 and UW163_RS22040 are separated by 87 nucleotides UW163_RS22030: UW163_RS22030 - TolC family protein, at 1,521,998 to 1,523,458 _RS22030 UW163_RS22035: UW163_RS22035 - TetR/AcrR family transcriptional regulator, at 1,523,546 to 1,524,160 _RS22035 UW163_RS22040: UW163_RS22040 - efflux RND transporter periplasmic adaptor subunit, at 1,524,248 to 1,525,360 _RS22040 Position (kb) 1523 1524 1525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1522.678 kb on + strand, within UW163_RS22030at 1522.679 kb on + strand, within UW163_RS22030at 1522.679 kb on + strand, within UW163_RS22030at 1522.679 kb on + strand, within UW163_RS22030at 1522.680 kb on - strand, within UW163_RS22030at 1522.680 kb on - strand, within UW163_RS22030at 1522.680 kb on - strand, within UW163_RS22030at 1522.680 kb on - strand, within UW163_RS22030at 1522.745 kb on + strand, within UW163_RS22030at 1522.746 kb on - strand, within UW163_RS22030at 1522.746 kb on - strand, within UW163_RS22030at 1522.807 kb on - strand, within UW163_RS22030at 1522.847 kb on + strand, within UW163_RS22030at 1522.847 kb on + strand, within UW163_RS22030at 1522.847 kb on + strand, within UW163_RS22030at 1522.847 kb on + strand, within UW163_RS22030at 1522.847 kb on + strand, within UW163_RS22030at 1522.848 kb on - strand, within UW163_RS22030at 1522.848 kb on - strand, within UW163_RS22030at 1522.848 kb on - strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.899 kb on + strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.900 kb on - strand, within UW163_RS22030at 1522.965 kb on + strand, within UW163_RS22030at 1522.965 kb on + strand, within UW163_RS22030at 1522.966 kb on - strand, within UW163_RS22030at 1523.058 kb on + strand, within UW163_RS22030at 1523.118 kb on + strand, within UW163_RS22030at 1523.118 kb on + strand, within UW163_RS22030at 1523.118 kb on + strand, within UW163_RS22030at 1523.118 kb on + strand, within UW163_RS22030at 1523.119 kb on - strand, within UW163_RS22030at 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.385 kb on + strandat 1523.386 kb on - strandat 1523.386 kb on - strandat 1523.386 kb on - strandat 1523.386 kb on - strandat 1523.386 kb on - strandat 1523.386 kb on - strandat 1523.488 kb on + strandat 1523.533 kb on + strandat 1523.534 kb on - strandat 1523.648 kb on + strand, within UW163_RS22035at 1523.702 kb on + strand, within UW163_RS22035at 1523.702 kb on + strand, within UW163_RS22035at 1523.702 kb on + strand, within UW163_RS22035at 1523.703 kb on - strand, within UW163_RS22035at 1523.703 kb on - strand, within UW163_RS22035at 1523.708 kb on + strand, within UW163_RS22035at 1523.709 kb on - strand, within UW163_RS22035at 1523.857 kb on + strand, within UW163_RS22035at 1523.857 kb on + strand, within UW163_RS22035at 1523.858 kb on - strand, within UW163_RS22035at 1523.943 kb on - strand, within UW163_RS22035at 1524.047 kb on + strand, within UW163_RS22035at 1524.047 kb on + strand, within UW163_RS22035at 1524.047 kb on + strand, within UW163_RS22035at 1524.048 kb on - strand, within UW163_RS22035at 1524.048 kb on - strand, within UW163_RS22035at 1524.048 kb on - strand, within UW163_RS22035at 1524.090 kb on - strand, within UW163_RS22035at 1524.101 kb on + strandat 1524.102 kb on - strandat 1524.265 kb on + strandat 1524.265 kb on + strandat 1524.266 kb on - strandat 1524.266 kb on - strandat 1524.266 kb on - strandat 1524.271 kb on + strandat 1524.271 kb on + strandat 1524.271 kb on + strandat 1524.272 kb on - strandat 1524.272 kb on - strandat 1524.277 kb on + strandat 1524.277 kb on + strandat 1524.462 kb on + strand, within UW163_RS22040at 1524.462 kb on + strand, within UW163_RS22040at 1524.462 kb on + strand, within UW163_RS22040at 1524.462 kb on + strand, within UW163_RS22040at 1524.462 kb on + strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.463 kb on - strand, within UW163_RS22040at 1524.659 kb on + strand, within UW163_RS22040at 1524.659 kb on + strand, within UW163_RS22040at 1524.660 kb on - strand, within UW163_RS22040at 1524.660 kb on - strand, within UW163_RS22040at 1524.670 kb on + strand, within UW163_RS22040at 1524.951 kb on + strand, within UW163_RS22040at 1524.951 kb on + strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1524.952 kb on - strand, within UW163_RS22040at 1525.016 kb on + strand, within UW163_RS22040at 1525.017 kb on - strand, within UW163_RS22040at 1525.017 kb on - strand, within UW163_RS22040

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
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1,522,678 + UW163_RS22030 0.47 -0.3
1,522,679 + UW163_RS22030 0.47 -0.3
1,522,679 + UW163_RS22030 0.47 -0.7
1,522,679 + UW163_RS22030 0.47 -0.9
1,522,680 - UW163_RS22030 0.47 +0.4
1,522,680 - UW163_RS22030 0.47 +0.7
1,522,680 - UW163_RS22030 0.47 -0.1
1,522,680 - UW163_RS22030 0.47 +0.5
1,522,745 + UW163_RS22030 0.51 -0.6
1,522,746 - UW163_RS22030 0.51 -0.7
1,522,746 - UW163_RS22030 0.51 -0.4
1,522,807 - UW163_RS22030 0.55 -1.0
1,522,847 + UW163_RS22030 0.58 -2.1
1,522,847 + UW163_RS22030 0.58 -0.1
1,522,847 + UW163_RS22030 0.58 -0.2
1,522,847 + UW163_RS22030 0.58 +0.2
1,522,847 + UW163_RS22030 0.58 -1.0
1,522,848 - UW163_RS22030 0.58 +0.2
1,522,848 - UW163_RS22030 0.58 -0.9
1,522,848 - UW163_RS22030 0.58 -2.7
1,522,899 + UW163_RS22030 0.62 -0.0
1,522,899 + UW163_RS22030 0.62 +0.1
1,522,899 + UW163_RS22030 0.62 -0.5
1,522,899 + UW163_RS22030 0.62 -1.8
1,522,899 + UW163_RS22030 0.62 -0.4
1,522,899 + UW163_RS22030 0.62 -0.4
1,522,899 + UW163_RS22030 0.62 +0.4
1,522,899 + UW163_RS22030 0.62 +0.5
1,522,899 + UW163_RS22030 0.62 -0.9
1,522,899 + UW163_RS22030 0.62 -0.8
1,522,899 + UW163_RS22030 0.62 -0.4
1,522,900 - UW163_RS22030 0.62 -1.3
1,522,900 - UW163_RS22030 0.62 -0.3
1,522,900 - UW163_RS22030 0.62 +0.7
1,522,900 - UW163_RS22030 0.62 +0.6
1,522,900 - UW163_RS22030 0.62 -0.3
1,522,900 - UW163_RS22030 0.62 -3.1
1,522,900 - UW163_RS22030 0.62 -2.1
1,522,900 - UW163_RS22030 0.62 +0.2
1,522,900 - UW163_RS22030 0.62 +1.2
1,522,900 - UW163_RS22030 0.62 +0.5
1,522,900 - UW163_RS22030 0.62 -1.0
1,522,965 + UW163_RS22030 0.66 +0.1
1,522,965 + UW163_RS22030 0.66 -0.9
1,522,966 - UW163_RS22030 0.66 +0.6
1,523,058 + UW163_RS22030 0.73 -0.9
1,523,118 + UW163_RS22030 0.77 +0.4
1,523,118 + UW163_RS22030 0.77 -0.4
1,523,118 + UW163_RS22030 0.77 -1.1
1,523,118 + UW163_RS22030 0.77 +0.7
1,523,119 - UW163_RS22030 0.77 -0.1
1,523,385 + +0.7
1,523,385 + -1.3
1,523,385 + -1.5
1,523,385 + +0.1
1,523,385 + -1.3
1,523,385 + +1.3
1,523,385 + +0.5
1,523,385 + +0.3
1,523,385 + -0.7
1,523,385 + -0.4
1,523,385 + -0.7
1,523,385 + +0.3
1,523,385 + -0.4
1,523,385 + -0.4
1,523,385 + -0.7
1,523,386 - -1.1
1,523,386 - -1.1
1,523,386 - +0.3
1,523,386 - -0.4
1,523,386 - +0.5
1,523,386 - -0.0
1,523,488 + -1.6
1,523,533 + -0.2
1,523,534 - +0.3
1,523,648 + UW163_RS22035 0.17 -2.1
1,523,702 + UW163_RS22035 0.25 +1.3
1,523,702 + UW163_RS22035 0.25 -1.0
1,523,702 + UW163_RS22035 0.25 -3.8
1,523,703 - UW163_RS22035 0.26 +0.3
1,523,703 - UW163_RS22035 0.26 -1.4
1,523,708 + UW163_RS22035 0.26 -2.0
1,523,709 - UW163_RS22035 0.27 -1.9
1,523,857 + UW163_RS22035 0.51 -0.7
1,523,857 + UW163_RS22035 0.51 -2.7
1,523,858 - UW163_RS22035 0.51 -2.1
1,523,943 - UW163_RS22035 0.65 -1.2
1,524,047 + UW163_RS22035 0.81 -1.7
1,524,047 + UW163_RS22035 0.81 -2.0
1,524,047 + UW163_RS22035 0.81 -1.5
1,524,048 - UW163_RS22035 0.82 -1.2
1,524,048 - UW163_RS22035 0.82 -2.0
1,524,048 - UW163_RS22035 0.82 -1.1
1,524,090 - UW163_RS22035 0.88 -2.6
1,524,101 + -2.7
1,524,102 - -2.8
1,524,265 + -0.4
1,524,265 + +0.0
1,524,266 - -0.8
1,524,266 - +0.1
1,524,266 - -1.1
1,524,271 + +0.0
1,524,271 + -0.2
1,524,271 + -0.3
1,524,272 - +0.2
1,524,272 - -1.3
1,524,277 + -1.4
1,524,277 + -0.2
1,524,462 + UW163_RS22040 0.19 -0.3
1,524,462 + UW163_RS22040 0.19 +0.6
1,524,462 + UW163_RS22040 0.19 +0.1
1,524,462 + UW163_RS22040 0.19 -0.4
1,524,462 + UW163_RS22040 0.19 -0.5
1,524,463 - UW163_RS22040 0.19 -0.8
1,524,463 - UW163_RS22040 0.19 -0.8
1,524,463 - UW163_RS22040 0.19 -0.7
1,524,463 - UW163_RS22040 0.19 -1.4
1,524,463 - UW163_RS22040 0.19 +4.9
1,524,463 - UW163_RS22040 0.19 +0.1
1,524,463 - UW163_RS22040 0.19 +0.4
1,524,659 + UW163_RS22040 0.37 -0.4
1,524,659 + UW163_RS22040 0.37 -0.5
1,524,660 - UW163_RS22040 0.37 -0.7
1,524,660 - UW163_RS22040 0.37 +0.4
1,524,670 + UW163_RS22040 0.38 -0.9
1,524,951 + UW163_RS22040 0.63 -1.4
1,524,951 + UW163_RS22040 0.63 -0.5
1,524,952 - UW163_RS22040 0.63 +1.7
1,524,952 - UW163_RS22040 0.63 -1.2
1,524,952 - UW163_RS22040 0.63 -0.6
1,524,952 - UW163_RS22040 0.63 -2.0
1,524,952 - UW163_RS22040 0.63 -1.3
1,524,952 - UW163_RS22040 0.63 -0.7
1,524,952 - UW163_RS22040 0.63 -1.4
1,525,016 + UW163_RS22040 0.69 -0.5
1,525,017 - UW163_RS22040 0.69 -1.2
1,525,017 - UW163_RS22040 0.69 +0.2

Or see this region's nucleotide sequence