Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS18055 and UW163_RS18060 overlap by 4 nucleotides UW163_RS18060 and UW163_RS18065 are separated by 28 nucleotides UW163_RS18065 and UW163_RS18070 are separated by 70 nucleotides UW163_RS18070 and UW163_RS18075 are separated by 4 nucleotides
UW163_RS18055: UW163_RS18055 - U32 family peptidase, at 446,235 to 447,119
_RS18055
UW163_RS18060: UW163_RS18060 - lipid carrier protein, at 447,116 to 447,541
_RS18060
UW163_RS18065: UW163_RS18065 - zinc-binding protein, at 447,570 to 447,980
_RS18065
UW163_RS18070: UW163_RS18070 - Crp/Fnr family transcriptional regulator, at 448,051 to 448,728
_RS18070
UW163_RS18075: UW163_RS18075 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 448,733 to 449,479
_RS18075
Position (kb) 447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 446.810 kb on + strand, within UW163_RS18055 at 446.810 kb on + strand, within UW163_RS18055 at 446.811 kb on - strand, within UW163_RS18055 at 446.907 kb on - strand, within UW163_RS18055 at 446.950 kb on + strand, within UW163_RS18055 at 446.950 kb on + strand, within UW163_RS18055 at 446.950 kb on + strand, within UW163_RS18055 at 446.951 kb on - strand, within UW163_RS18055 at 446.951 kb on - strand, within UW163_RS18055 at 447.072 kb on + strand at 447.421 kb on + strand, within UW163_RS18060 at 447.539 kb on + strand at 447.540 kb on - strand at 447.540 kb on - strand at 447.597 kb on + strand at 447.597 kb on + strand at 447.597 kb on + strand at 447.598 kb on - strand at 447.598 kb on - strand at 447.983 kb on + strand at 447.983 kb on + strand at 447.984 kb on - strand at 448.041 kb on + strand at 448.041 kb on + strand at 448.042 kb on - strand at 448.254 kb on - strand, within UW163_RS18070 at 448.314 kb on + strand, within UW163_RS18070 at 448.314 kb on + strand, within UW163_RS18070 at 448.315 kb on - strand, within UW163_RS18070 at 448.315 kb on - strand, within UW163_RS18070 at 448.315 kb on - strand, within UW163_RS18070 at 448.445 kb on + strand, within UW163_RS18070 at 448.568 kb on + strand, within UW163_RS18070 at 448.569 kb on - strand, within UW163_RS18070 at 448.625 kb on - strand, within UW163_RS18070 at 448.625 kb on - strand, within UW163_RS18070 at 448.744 kb on + strand at 448.744 kb on + strand at 448.744 kb on + strand at 448.744 kb on + strand at 448.744 kb on + strand at 448.744 kb on + strand at 448.744 kb on + strand at 448.745 kb on - strand at 448.745 kb on - strand at 448.745 kb on - strand at 448.745 kb on - strand at 448.745 kb on - strand at 448.745 kb on - strand at 448.826 kb on + strand, within UW163_RS18075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 446,810 + UW163_RS18055 0.65 -0.9 446,810 + UW163_RS18055 0.65 -0.8 446,811 - UW163_RS18055 0.65 -0.1 446,907 - UW163_RS18055 0.76 -0.7 446,950 + UW163_RS18055 0.81 -0.6 446,950 + UW163_RS18055 0.81 -2.9 446,950 + UW163_RS18055 0.81 -1.5 446,951 - UW163_RS18055 0.81 -2.6 446,951 - UW163_RS18055 0.81 -0.1 447,072 + -0.6 447,421 + UW163_RS18060 0.72 -0.9 447,539 + -0.2 447,540 - +0.6 447,540 - +0.8 447,597 + +0.2 447,597 + -1.3 447,597 + -0.3 447,598 - -1.6 447,598 - -0.5 447,983 + -0.7 447,983 + -1.9 447,984 - -0.1 448,041 + -0.3 448,041 + -1.2 448,042 - -0.7 448,254 - UW163_RS18070 0.30 -1.5 448,314 + UW163_RS18070 0.39 +0.7 448,314 + UW163_RS18070 0.39 -0.8 448,315 - UW163_RS18070 0.39 -1.8 448,315 - UW163_RS18070 0.39 -0.3 448,315 - UW163_RS18070 0.39 +0.9 448,445 + UW163_RS18070 0.58 +0.3 448,568 + UW163_RS18070 0.76 -0.1 448,569 - UW163_RS18070 0.76 +0.2 448,625 - UW163_RS18070 0.85 +0.4 448,625 - UW163_RS18070 0.85 -0.1 448,744 + +2.4 448,744 + -0.4 448,744 + +1.4 448,744 + -0.4 448,744 + +0.3 448,744 + -0.8 448,744 + -0.4 448,745 - -0.9 448,745 - +1.1 448,745 - -2.1 448,745 - -2.2 448,745 - +0.9 448,745 - +0.9 448,826 + UW163_RS18075 0.12 +0.7
Or see this region's nucleotide sequence