Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS17670

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS17665 and UW163_RS17670 are separated by 48 nucleotidesUW163_RS17670 and UW163_RS17675 overlap by 29 nucleotidesUW163_RS17675 and UW163_RS17680 are separated by 2 nucleotides UW163_RS17665: UW163_RS17665 - fatty acyl-AMP ligase, at 342,841 to 346,182 _RS17665 UW163_RS17670: UW163_RS17670 - hypothetical protein, at 346,231 to 347,004 _RS17670 UW163_RS17675: UW163_RS17675 - hypothetical protein, at 346,976 to 347,989 _RS17675 UW163_RS17680: UW163_RS17680 - hypothetical protein, at 347,992 to 349,632 _RS17680 Position (kb) 346 347 348Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 345.256 kb on - strand, within UW163_RS17665at 345.357 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.376 kb on + strand, within UW163_RS17665at 345.377 kb on - strand, within UW163_RS17665at 345.377 kb on - strand, within UW163_RS17665at 345.377 kb on - strand, within UW163_RS17665at 345.377 kb on - strand, within UW163_RS17665at 345.388 kb on + strand, within UW163_RS17665at 345.388 kb on + strand, within UW163_RS17665at 345.388 kb on + strand, within UW163_RS17665at 345.487 kb on - strand, within UW163_RS17665at 345.487 kb on - strand, within UW163_RS17665at 345.568 kb on + strand, within UW163_RS17665at 345.640 kb on + strand, within UW163_RS17665at 345.640 kb on + strand, within UW163_RS17665at 345.640 kb on + strand, within UW163_RS17665at 345.640 kb on + strand, within UW163_RS17665at 345.641 kb on - strand, within UW163_RS17665at 345.641 kb on - strand, within UW163_RS17665at 345.641 kb on - strand, within UW163_RS17665at 345.641 kb on - strand, within UW163_RS17665at 345.744 kb on + strand, within UW163_RS17665at 345.744 kb on + strand, within UW163_RS17665at 345.745 kb on - strand, within UW163_RS17665at 345.745 kb on - strand, within UW163_RS17665at 345.856 kb on + strandat 345.856 kb on + strandat 345.856 kb on + strandat 345.856 kb on + strandat 345.857 kb on - strandat 345.857 kb on - strandat 345.896 kb on - strandat 345.913 kb on + strandat 345.914 kb on - strandat 345.916 kb on + strandat 345.916 kb on + strandat 345.916 kb on + strandat 345.916 kb on + strandat 345.916 kb on + strandat 345.917 kb on - strandat 345.917 kb on - strandat 345.917 kb on - strandat 345.917 kb on - strandat 346.120 kb on + strandat 346.120 kb on + strandat 346.132 kb on + strandat 346.132 kb on + strandat 346.258 kb on + strandat 346.258 kb on + strandat 346.258 kb on + strandat 346.259 kb on - strandat 346.317 kb on + strand, within UW163_RS17670at 346.317 kb on + strand, within UW163_RS17670at 346.317 kb on + strand, within UW163_RS17670at 346.318 kb on - strand, within UW163_RS17670at 346.318 kb on - strand, within UW163_RS17670at 346.367 kb on + strand, within UW163_RS17670at 346.367 kb on + strand, within UW163_RS17670at 346.601 kb on + strand, within UW163_RS17670at 346.601 kb on + strand, within UW163_RS17670at 346.602 kb on - strand, within UW163_RS17670at 346.682 kb on + strand, within UW163_RS17670at 346.682 kb on + strand, within UW163_RS17670at 346.682 kb on + strand, within UW163_RS17670at 346.683 kb on - strand, within UW163_RS17670at 346.775 kb on + strand, within UW163_RS17670at 346.775 kb on + strand, within UW163_RS17670at 347.265 kb on - strand, within UW163_RS17675at 347.386 kb on - strand, within UW163_RS17675at 347.386 kb on - strand, within UW163_RS17675at 347.386 kb on - strand, within UW163_RS17675at 347.476 kb on - strand, within UW163_RS17675at 347.575 kb on - strand, within UW163_RS17675at 347.583 kb on + strand, within UW163_RS17675at 347.584 kb on - strand, within UW163_RS17675at 347.584 kb on - strand, within UW163_RS17675at 347.748 kb on + strand, within UW163_RS17675at 347.748 kb on + strand, within UW163_RS17675at 347.817 kb on + strand, within UW163_RS17675at 347.817 kb on + strand, within UW163_RS17675at 347.817 kb on + strand, within UW163_RS17675at 347.818 kb on - strand, within UW163_RS17675at 347.845 kb on - strand, within UW163_RS17675at 347.853 kb on + strand, within UW163_RS17675at 347.853 kb on + strand, within UW163_RS17675at 347.853 kb on + strand, within UW163_RS17675at 347.853 kb on + strand, within UW163_RS17675at 347.854 kb on - strand, within UW163_RS17675at 347.886 kb on + strand, within UW163_RS17675at 347.886 kb on + strand, within UW163_RS17675at 347.886 kb on + strand, within UW163_RS17675at 347.886 kb on + strand, within UW163_RS17675at 347.886 kb on + strand, within UW163_RS17675at 347.887 kb on - strand, within UW163_RS17675at 347.887 kb on - strand, within UW163_RS17675at 347.887 kb on - strand, within UW163_RS17675at 347.887 kb on - strand, within UW163_RS17675at 347.887 kb on - strand, within UW163_RS17675

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
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345,256 - UW163_RS17665 0.72 -1.3
345,357 + UW163_RS17665 0.75 -0.1
345,376 + UW163_RS17665 0.76 -0.4
345,376 + UW163_RS17665 0.76 +0.9
345,376 + UW163_RS17665 0.76 +1.1
345,376 + UW163_RS17665 0.76 -0.4
345,376 + UW163_RS17665 0.76 -1.9
345,376 + UW163_RS17665 0.76 -0.9
345,376 + UW163_RS17665 0.76 -0.8
345,376 + UW163_RS17665 0.76 +0.0
345,376 + UW163_RS17665 0.76 -0.4
345,376 + UW163_RS17665 0.76 -1.2
345,377 - UW163_RS17665 0.76 +1.1
345,377 - UW163_RS17665 0.76 -0.3
345,377 - UW163_RS17665 0.76 -0.9
345,377 - UW163_RS17665 0.76 -0.4
345,388 + UW163_RS17665 0.76 -0.1
345,388 + UW163_RS17665 0.76 -1.0
345,388 + UW163_RS17665 0.76 -0.1
345,487 - UW163_RS17665 0.79 -0.9
345,487 - UW163_RS17665 0.79 +1.5
345,568 + UW163_RS17665 0.82 -0.4
345,640 + UW163_RS17665 0.84 -1.7
345,640 + UW163_RS17665 0.84 +0.6
345,640 + UW163_RS17665 0.84 +0.7
345,640 + UW163_RS17665 0.84 -0.5
345,641 - UW163_RS17665 0.84 -1.1
345,641 - UW163_RS17665 0.84 -3.2
345,641 - UW163_RS17665 0.84 -0.4
345,641 - UW163_RS17665 0.84 -0.0
345,744 + UW163_RS17665 0.87 +1.1
345,744 + UW163_RS17665 0.87 +0.9
345,745 - UW163_RS17665 0.87 -4.6
345,745 - UW163_RS17665 0.87 -0.8
345,856 + +0.6
345,856 + -1.5
345,856 + -0.0
345,856 + +0.2
345,857 - -0.7
345,857 - +0.6
345,896 - +0.3
345,913 + -0.1
345,914 - -0.2
345,916 + -1.5
345,916 + -0.1
345,916 + -0.3
345,916 + +1.7
345,916 + +0.1
345,917 - +0.1
345,917 - -0.4
345,917 - -0.2
345,917 - -1.0
346,120 + +0.4
346,120 + -2.6
346,132 + -1.0
346,132 + +1.0
346,258 + -0.8
346,258 + +0.1
346,258 + -1.2
346,259 - -0.7
346,317 + UW163_RS17670 0.11 -0.7
346,317 + UW163_RS17670 0.11 -1.7
346,317 + UW163_RS17670 0.11 +0.4
346,318 - UW163_RS17670 0.11 -0.3
346,318 - UW163_RS17670 0.11 +0.2
346,367 + UW163_RS17670 0.18 -1.8
346,367 + UW163_RS17670 0.18 -0.1
346,601 + UW163_RS17670 0.48 -2.2
346,601 + UW163_RS17670 0.48 +0.9
346,602 - UW163_RS17670 0.48 -1.2
346,682 + UW163_RS17670 0.58 -0.7
346,682 + UW163_RS17670 0.58 -0.1
346,682 + UW163_RS17670 0.58 +0.7
346,683 - UW163_RS17670 0.58 -0.1
346,775 + UW163_RS17670 0.70 -0.1
346,775 + UW163_RS17670 0.70 -2.0
347,265 - UW163_RS17675 0.29 -2.1
347,386 - UW163_RS17675 0.40 -1.0
347,386 - UW163_RS17675 0.40 -0.7
347,386 - UW163_RS17675 0.40 -2.1
347,476 - UW163_RS17675 0.49 +0.2
347,575 - UW163_RS17675 0.59 +0.3
347,583 + UW163_RS17675 0.60 -1.2
347,584 - UW163_RS17675 0.60 -0.5
347,584 - UW163_RS17675 0.60 -0.4
347,748 + UW163_RS17675 0.76 -2.7
347,748 + UW163_RS17675 0.76 -0.5
347,817 + UW163_RS17675 0.83 -0.2
347,817 + UW163_RS17675 0.83 -0.1
347,817 + UW163_RS17675 0.83 +0.2
347,818 - UW163_RS17675 0.83 +0.9
347,845 - UW163_RS17675 0.86 +0.2
347,853 + UW163_RS17675 0.86 -1.1
347,853 + UW163_RS17675 0.86 -0.1
347,853 + UW163_RS17675 0.86 -3.3
347,853 + UW163_RS17675 0.86 -1.0
347,854 - UW163_RS17675 0.87 -0.1
347,886 + UW163_RS17675 0.90 -0.9
347,886 + UW163_RS17675 0.90 +0.2
347,886 + UW163_RS17675 0.90 -0.2
347,886 + UW163_RS17675 0.90 -1.1
347,886 + UW163_RS17675 0.90 -0.1
347,887 - UW163_RS17675 0.90 -1.0
347,887 - UW163_RS17675 0.90 -1.2
347,887 - UW163_RS17675 0.90 -0.7
347,887 - UW163_RS17675 0.90 -0.1
347,887 - UW163_RS17675 0.90 -2.7

Or see this region's nucleotide sequence