Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS17640

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntUW163_RS17635 and UW163_RS17640 are separated by 525 nucleotidesUW163_RS17640 and UW163_RS17645 are separated by 244 nucleotidesUW163_RS17645 and UW163_RS17650 are separated by 37 nucleotides UW163_RS17635: UW163_RS17635 - diguanylate cyclase, at 335,131 to 336,598 _RS17635 UW163_RS17640: UW163_RS17640 - tetratricopeptide repeat protein, at 337,124 to 338,776 _RS17640 UW163_RS17645: UW163_RS17645 - hypothetical protein, at 339,021 to 339,317 _RS17645 UW163_RS17650: UW163_RS17650 - GGDEF domain-containing protein, at 339,355 to 340,878 _RS17650 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 336.159 kb on + strand, within UW163_RS17635at 336.160 kb on - strand, within UW163_RS17635at 336.160 kb on - strand, within UW163_RS17635at 336.161 kb on + strand, within UW163_RS17635at 336.161 kb on + strand, within UW163_RS17635at 336.161 kb on + strand, within UW163_RS17635at 336.162 kb on - strand, within UW163_RS17635at 336.162 kb on - strand, within UW163_RS17635at 336.162 kb on - strand, within UW163_RS17635at 336.162 kb on - strandat 336.162 kb on - strand, within UW163_RS17635at 336.171 kb on + strand, within UW163_RS17635at 336.172 kb on - strand, within UW163_RS17635at 336.172 kb on - strand, within UW163_RS17635at 336.200 kb on + strand, within UW163_RS17635at 336.200 kb on + strand, within UW163_RS17635at 336.201 kb on - strand, within UW163_RS17635at 336.408 kb on + strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.409 kb on - strand, within UW163_RS17635at 336.545 kb on + strandat 336.545 kb on + strandat 336.545 kb on + strandat 336.546 kb on - strandat 336.546 kb on - strandat 336.547 kb on - strandat 336.577 kb on + strandat 336.578 kb on - strandat 336.584 kb on + strandat 336.976 kb on + strandat 336.976 kb on + strandat 337.035 kb on + strandat 337.036 kb on - strandat 337.095 kb on - strandat 337.550 kb on + strand, within UW163_RS17640at 337.550 kb on + strand, within UW163_RS17640at 337.551 kb on - strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.568 kb on + strand, within UW163_RS17640at 337.569 kb on - strand, within UW163_RS17640at 337.629 kb on - strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.652 kb on + strand, within UW163_RS17640at 337.653 kb on - strand, within UW163_RS17640at 337.653 kb on - strand, within UW163_RS17640at 337.712 kb on + strand, within UW163_RS17640at 337.713 kb on - strand, within UW163_RS17640at 337.713 kb on - strand, within UW163_RS17640at 337.713 kb on - strand, within UW163_RS17640at 337.719 kb on - strand, within UW163_RS17640at 337.793 kb on + strand, within UW163_RS17640at 337.793 kb on + strand, within UW163_RS17640at 337.793 kb on + strand, within UW163_RS17640at 337.793 kb on + strand, within UW163_RS17640at 337.793 kb on + strand, within UW163_RS17640at 337.794 kb on - strand, within UW163_RS17640at 337.794 kb on - strand, within UW163_RS17640at 338.122 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.123 kb on + strand, within UW163_RS17640at 338.124 kb on - strand, within UW163_RS17640at 338.124 kb on - strand, within UW163_RS17640at 338.124 kb on - strandat 338.124 kb on - strand, within UW163_RS17640at 338.165 kb on + strand, within UW163_RS17640at 338.165 kb on + strand, within UW163_RS17640at 338.165 kb on + strand, within UW163_RS17640at 338.166 kb on - strand, within UW163_RS17640at 338.166 kb on - strand, within UW163_RS17640at 338.166 kb on - strand, within UW163_RS17640at 338.166 kb on - strand, within UW163_RS17640at 338.169 kb on + strand, within UW163_RS17640at 338.169 kb on + strand, within UW163_RS17640at 338.169 kb on + strand, within UW163_RS17640at 338.169 kb on + strand, within UW163_RS17640at 338.170 kb on - strand, within UW163_RS17640at 338.170 kb on - strand, within UW163_RS17640at 338.170 kb on - strand, within UW163_RS17640at 338.267 kb on - strand, within UW163_RS17640at 338.267 kb on - strand, within UW163_RS17640at 338.312 kb on + strand, within UW163_RS17640at 338.313 kb on - strand, within UW163_RS17640at 338.313 kb on - strand, within UW163_RS17640at 338.315 kb on + strand, within UW163_RS17640at 338.315 kb on + strand, within UW163_RS17640at 338.316 kb on - strand, within UW163_RS17640at 338.316 kb on - strand, within UW163_RS17640at 338.316 kb on - strand, within UW163_RS17640at 338.574 kb on - strand, within UW163_RS17640at 338.574 kb on - strand, within UW163_RS17640at 338.623 kb on + strandat 338.623 kb on + strandat 338.623 kb on + strandat 338.623 kb on + strandat 338.624 kb on - strandat 338.624 kb on - strandat 338.624 kb on - strandat 338.783 kb on + strandat 338.783 kb on + strandat 338.783 kb on + strandat 338.784 kb on - strandat 338.784 kb on - strandat 338.784 kb on - strandat 338.784 kb on - strandat 338.808 kb on + strandat 338.808 kb on + strandat 338.808 kb on + strandat 338.809 kb on - strandat 338.809 kb on - strandat 338.809 kb on - strandat 338.863 kb on + strandat 338.863 kb on + strandat 338.863 kb on + strandat 338.863 kb on + strandat 338.863 kb on + strandat 338.863 kb on + strandat 338.864 kb on - strandat 338.864 kb on - strandat 338.907 kb on - strandat 338.963 kb on + strandat 338.963 kb on + strandat 338.964 kb on - strandat 338.964 kb on - strandat 338.987 kb on - strandat 338.993 kb on + strandat 338.994 kb on - strandat 338.994 kb on - strandat 339.009 kb on + strandat 339.009 kb on + strandat 339.010 kb on - strandat 339.010 kb on - strandat 339.021 kb on - strandat 339.102 kb on + strand, within UW163_RS17645at 339.102 kb on + strand, within UW163_RS17645at 339.102 kb on + strand, within UW163_RS17645at 339.102 kb on + strand, within UW163_RS17645at 339.102 kb on + strand, within UW163_RS17645at 339.102 kb on + strand, within UW163_RS17645at 339.103 kb on - strand, within UW163_RS17645at 339.103 kb on - strand, within UW163_RS17645at 339.108 kb on + strand, within UW163_RS17645at 339.108 kb on + strand, within UW163_RS17645at 339.109 kb on - strand, within UW163_RS17645at 339.380 kb on - strandat 339.380 kb on - strandat 339.380 kb on - strandat 339.452 kb on + strandat 339.452 kb on + strandat 339.452 kb on + strandat 339.452 kb on + strandat 339.452 kb on + strandat 339.573 kb on + strand, within UW163_RS17650at 339.573 kb on + strand, within UW163_RS17650at 339.573 kb on + strand, within UW163_RS17650at 339.574 kb on - strand, within UW163_RS17650at 339.574 kb on - strandat 339.574 kb on - strand, within UW163_RS17650at 339.762 kb on - strand, within UW163_RS17650at 339.762 kb on - strand, within UW163_RS17650at 339.774 kb on - strand, within UW163_RS17650at 339.774 kb on - strand, within UW163_RS17650at 339.775 kb on - strand, within UW163_RS17650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
remove
336,159 + UW163_RS17635 0.70 +0.8
336,160 - UW163_RS17635 0.70 -0.8
336,160 - UW163_RS17635 0.70 -3.4
336,161 + UW163_RS17635 0.70 +1.2
336,161 + UW163_RS17635 0.70 -0.8
336,161 + UW163_RS17635 0.70 +2.5
336,162 - UW163_RS17635 0.70 +1.3
336,162 - UW163_RS17635 0.70 -0.5
336,162 - UW163_RS17635 0.70 +0.8
336,162 - +1.3
336,162 - UW163_RS17635 0.70 -1.4
336,171 + UW163_RS17635 0.71 -3.6
336,172 - UW163_RS17635 0.71 -1.7
336,172 - UW163_RS17635 0.71 -1.2
336,200 + UW163_RS17635 0.73 +0.0
336,200 + UW163_RS17635 0.73 +0.4
336,201 - UW163_RS17635 0.73 +0.5
336,408 + UW163_RS17635 0.87 -1.1
336,409 - UW163_RS17635 0.87 -1.8
336,409 - UW163_RS17635 0.87 -2.2
336,409 - UW163_RS17635 0.87 -1.4
336,409 - UW163_RS17635 0.87 -0.6
336,545 + -0.2
336,545 + -0.1
336,545 + -1.6
336,546 - -0.6
336,546 - +0.9
336,547 - -0.6
336,577 + -0.1
336,578 - -0.5
336,584 + +1.5
336,976 + -2.1
336,976 + +0.1
337,035 + -2.0
337,036 - +0.8
337,095 - +0.5
337,550 + UW163_RS17640 0.26 -0.7
337,550 + UW163_RS17640 0.26 -2.8
337,551 - UW163_RS17640 0.26 -0.1
337,568 + UW163_RS17640 0.27 -2.9
337,568 + UW163_RS17640 0.27 +0.9
337,568 + UW163_RS17640 0.27 -0.5
337,568 + UW163_RS17640 0.27 +1.3
337,569 - UW163_RS17640 0.27 -1.8
337,629 - UW163_RS17640 0.31 +0.1
337,652 + UW163_RS17640 0.32 -1.4
337,652 + UW163_RS17640 0.32 -0.1
337,652 + UW163_RS17640 0.32 -0.6
337,652 + UW163_RS17640 0.32 -0.4
337,652 + UW163_RS17640 0.32 -0.5
337,652 + UW163_RS17640 0.32 -0.7
337,652 + UW163_RS17640 0.32 -0.1
337,653 - UW163_RS17640 0.32 -0.1
337,653 - UW163_RS17640 0.32 +0.1
337,712 + UW163_RS17640 0.36 -0.2
337,713 - UW163_RS17640 0.36 -0.0
337,713 - UW163_RS17640 0.36 -1.2
337,713 - UW163_RS17640 0.36 -0.3
337,719 - UW163_RS17640 0.36 -0.5
337,793 + UW163_RS17640 0.40 +0.4
337,793 + UW163_RS17640 0.40 +0.9
337,793 + UW163_RS17640 0.40 -2.5
337,793 + UW163_RS17640 0.40 -0.4
337,793 + UW163_RS17640 0.40 -0.5
337,794 - UW163_RS17640 0.41 -1.0
337,794 - UW163_RS17640 0.41 +0.5
338,122 + UW163_RS17640 0.60 +0.8
338,123 + UW163_RS17640 0.60 -0.6
338,123 + UW163_RS17640 0.60 -0.4
338,123 + UW163_RS17640 0.60 +2.5
338,123 + UW163_RS17640 0.60 -0.9
338,123 + UW163_RS17640 0.60 -1.4
338,123 + UW163_RS17640 0.60 -0.0
338,123 + UW163_RS17640 0.60 +0.9
338,123 + UW163_RS17640 0.60 -0.6
338,124 - UW163_RS17640 0.60 -0.3
338,124 - UW163_RS17640 0.60 +1.7
338,124 - +0.1
338,124 - UW163_RS17640 0.60 -0.8
338,165 + UW163_RS17640 0.63 +0.9
338,165 + UW163_RS17640 0.63 -0.9
338,165 + UW163_RS17640 0.63 -0.7
338,166 - UW163_RS17640 0.63 -1.8
338,166 - UW163_RS17640 0.63 -0.4
338,166 - UW163_RS17640 0.63 -0.4
338,166 - UW163_RS17640 0.63 -0.4
338,169 + UW163_RS17640 0.63 +0.1
338,169 + UW163_RS17640 0.63 -1.4
338,169 + UW163_RS17640 0.63 -2.0
338,169 + UW163_RS17640 0.63 +0.5
338,170 - UW163_RS17640 0.63 -2.9
338,170 - UW163_RS17640 0.63 -1.1
338,170 - UW163_RS17640 0.63 +0.0
338,267 - UW163_RS17640 0.69 -0.2
338,267 - UW163_RS17640 0.69 -0.5
338,312 + UW163_RS17640 0.72 +1.1
338,313 - UW163_RS17640 0.72 -0.4
338,313 - UW163_RS17640 0.72 +1.3
338,315 + UW163_RS17640 0.72 +1.9
338,315 + UW163_RS17640 0.72 -2.9
338,316 - UW163_RS17640 0.72 -2.0
338,316 - UW163_RS17640 0.72 -0.8
338,316 - UW163_RS17640 0.72 -0.8
338,574 - UW163_RS17640 0.88 +0.2
338,574 - UW163_RS17640 0.88 +0.2
338,623 + -0.1
338,623 + -1.5
338,623 + +0.6
338,623 + +0.1
338,624 - -0.5
338,624 - +0.6
338,624 - +0.4
338,783 + -0.2
338,783 + +0.9
338,783 + +0.6
338,784 - -0.0
338,784 - +0.5
338,784 - -0.5
338,784 - -0.3
338,808 + -2.8
338,808 + +0.7
338,808 + -0.1
338,809 - -0.5
338,809 - +1.4
338,809 - +1.0
338,863 + +2.5
338,863 + -1.8
338,863 + -0.1
338,863 + +0.1
338,863 + +0.3
338,863 + -2.2
338,864 - +2.5
338,864 - -0.4
338,907 - +1.3
338,963 + -0.0
338,963 + -1.8
338,964 - -0.9
338,964 - +1.5
338,987 - -1.0
338,993 + -1.4
338,994 - -2.1
338,994 - -1.2
339,009 + -1.0
339,009 + -0.1
339,010 - -0.1
339,010 - -0.9
339,021 - -1.1
339,102 + UW163_RS17645 0.27 +0.9
339,102 + UW163_RS17645 0.27 -0.1
339,102 + UW163_RS17645 0.27 +2.3
339,102 + UW163_RS17645 0.27 -0.4
339,102 + UW163_RS17645 0.27 -0.4
339,102 + UW163_RS17645 0.27 -0.0
339,103 - UW163_RS17645 0.28 +0.3
339,103 - UW163_RS17645 0.28 -0.5
339,108 + UW163_RS17645 0.29 -1.4
339,108 + UW163_RS17645 0.29 +0.1
339,109 - UW163_RS17645 0.30 -0.1
339,380 - +0.3
339,380 - -0.0
339,380 - -1.7
339,452 + +0.2
339,452 + +0.9
339,452 + +0.1
339,452 + +0.9
339,452 + -1.1
339,573 + UW163_RS17650 0.14 -0.0
339,573 + UW163_RS17650 0.14 -1.4
339,573 + UW163_RS17650 0.14 -0.9
339,574 - UW163_RS17650 0.14 -0.4
339,574 - -0.4
339,574 - UW163_RS17650 0.14 +1.0
339,762 - UW163_RS17650 0.27 -1.1
339,762 - UW163_RS17650 0.27 +1.1
339,774 - UW163_RS17650 0.27 -0.3
339,774 - UW163_RS17650 0.27 +0.8
339,775 - UW163_RS17650 0.28 -0.7

Or see this region's nucleotide sequence