Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS17285 and UW163_RS17290 are separated by 98 nucleotides UW163_RS17290 and UW163_RS17295 overlap by 4 nucleotides UW163_RS17295 and UW163_RS17300 are separated by 46 nucleotides
UW163_RS17285: UW163_RS17285 - efflux transporter periplasmic adaptor subunit, at 263,216 to 264,362
_RS17285
UW163_RS17290: UW163_RS17290 - DNA-binding response regulator, at 264,461 to 265,231
_RS17290
UW163_RS17295: UW163_RS17295 - sensor histidine kinase, at 265,228 to 266,310
_RS17295
UW163_RS17300: UW163_RS17300 - nitronate monooxygenase, at 266,357 to 267,364
_RS17300
Position (kb) 265
266
267 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 264.362 kb on + strand at 264.363 kb on - strand at 264.363 kb on - strand at 264.363 kb on - strand at 264.449 kb on + strand at 264.450 kb on - strand at 264.593 kb on + strand, within UW163_RS17290 at 264.593 kb on + strand, within UW163_RS17290 at 264.594 kb on - strand, within UW163_RS17290 at 264.594 kb on - strand, within UW163_RS17290 at 264.594 kb on - strand, within UW163_RS17290 at 264.827 kb on + strand, within UW163_RS17290 at 264.827 kb on + strand, within UW163_RS17290 at 264.828 kb on - strand, within UW163_RS17290 at 264.828 kb on - strand, within UW163_RS17290 at 265.120 kb on + strand, within UW163_RS17290 at 265.120 kb on + strand, within UW163_RS17290 at 265.120 kb on + strand at 265.122 kb on - strand, within UW163_RS17290 at 265.315 kb on + strand at 265.316 kb on - strand at 265.324 kb on + strand at 265.324 kb on + strand at 265.324 kb on + strand at 265.325 kb on - strand at 265.325 kb on - strand at 265.325 kb on - strand at 265.325 kb on - strand at 265.327 kb on + strand at 265.327 kb on + strand at 265.327 kb on + strand at 265.327 kb on + strand at 265.328 kb on - strand at 265.342 kb on + strand, within UW163_RS17295 at 265.342 kb on + strand, within UW163_RS17295 at 265.342 kb on + strand, within UW163_RS17295 at 265.343 kb on - strand, within UW163_RS17295 at 265.343 kb on - strand, within UW163_RS17295 at 265.683 kb on - strand, within UW163_RS17295 at 265.683 kb on - strand, within UW163_RS17295 at 265.683 kb on - strand, within UW163_RS17295 at 266.631 kb on + strand, within UW163_RS17300 at 266.631 kb on + strand, within UW163_RS17300 at 266.631 kb on + strand, within UW163_RS17300 at 266.631 kb on + strand, within UW163_RS17300 at 266.632 kb on - strand, within UW163_RS17300 at 266.632 kb on - strand, within UW163_RS17300 at 266.632 kb on - strand, within UW163_RS17300 at 266.632 kb on - strand, within UW163_RS17300 at 266.664 kb on + strand, within UW163_RS17300 at 266.664 kb on + strand, within UW163_RS17300 at 266.665 kb on - strand, within UW163_RS17300 at 266.665 kb on - strand, within UW163_RS17300 at 266.757 kb on + strand, within UW163_RS17300 at 266.757 kb on + strand, within UW163_RS17300 at 266.757 kb on + strand, within UW163_RS17300 at 266.758 kb on - strand, within UW163_RS17300 at 266.758 kb on - strand, within UW163_RS17300 at 266.758 kb on - strand, within UW163_RS17300 at 266.997 kb on + strand, within UW163_RS17300 at 267.063 kb on + strand, within UW163_RS17300 at 267.063 kb on + strand, within UW163_RS17300 at 267.063 kb on + strand, within UW163_RS17300 at 267.063 kb on + strand, within UW163_RS17300 at 267.064 kb on - strand, within UW163_RS17300 at 267.064 kb on - strand, within UW163_RS17300 at 267.064 kb on - strand, within UW163_RS17300 at 267.074 kb on + strand, within UW163_RS17300
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 264,362 + +0.1 264,363 - -0.1 264,363 - +0.6 264,363 - -0.8 264,449 + -2.7 264,450 - -0.2 264,593 + UW163_RS17290 0.17 -0.5 264,593 + UW163_RS17290 0.17 +0.3 264,594 - UW163_RS17290 0.17 -0.8 264,594 - UW163_RS17290 0.17 -1.5 264,594 - UW163_RS17290 0.17 +0.5 264,827 + UW163_RS17290 0.47 +0.1 264,827 + UW163_RS17290 0.47 +0.0 264,828 - UW163_RS17290 0.48 +0.4 264,828 - UW163_RS17290 0.48 +0.7 265,120 + UW163_RS17290 0.85 -0.0 265,120 + UW163_RS17290 0.85 +0.3 265,120 + +1.9 265,122 - UW163_RS17290 0.86 +1.7 265,315 + +2.5 265,316 - -0.6 265,324 + -0.7 265,324 + -0.1 265,324 + -3.0 265,325 - +0.5 265,325 - +1.1 265,325 - -0.4 265,325 - +0.7 265,327 + -0.2 265,327 + -0.1 265,327 + -0.9 265,327 + -1.8 265,328 - -0.7 265,342 + UW163_RS17295 0.11 -0.3 265,342 + UW163_RS17295 0.11 +3.1 265,342 + UW163_RS17295 0.11 -0.8 265,343 - UW163_RS17295 0.11 +0.2 265,343 - UW163_RS17295 0.11 -1.2 265,683 - UW163_RS17295 0.42 -2.4 265,683 - UW163_RS17295 0.42 -0.5 265,683 - UW163_RS17295 0.42 -0.6 266,631 + UW163_RS17300 0.27 +0.8 266,631 + UW163_RS17300 0.27 +1.5 266,631 + UW163_RS17300 0.27 -0.9 266,631 + UW163_RS17300 0.27 +0.2 266,632 - UW163_RS17300 0.27 -0.5 266,632 - UW163_RS17300 0.27 -0.3 266,632 - UW163_RS17300 0.27 +0.0 266,632 - UW163_RS17300 0.27 -0.5 266,664 + UW163_RS17300 0.30 -2.0 266,664 + UW163_RS17300 0.30 +0.2 266,665 - UW163_RS17300 0.31 +3.1 266,665 - UW163_RS17300 0.31 +1.0 266,757 + UW163_RS17300 0.40 -0.8 266,757 + UW163_RS17300 0.40 +0.0 266,757 + UW163_RS17300 0.40 +0.9 266,758 - UW163_RS17300 0.40 +0.5 266,758 - UW163_RS17300 0.40 -0.1 266,758 - UW163_RS17300 0.40 -0.9 266,997 + UW163_RS17300 0.63 -0.8 267,063 + UW163_RS17300 0.70 +0.2 267,063 + UW163_RS17300 0.70 -4.0 267,063 + UW163_RS17300 0.70 +0.2 267,063 + UW163_RS17300 0.70 +1.3 267,064 - UW163_RS17300 0.70 +0.3 267,064 - UW163_RS17300 0.70 -0.2 267,064 - UW163_RS17300 0.70 -0.8 267,074 + UW163_RS17300 0.71 +0.1
Or see this region's nucleotide sequence