Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS10125

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS10120 and UW163_RS10125 are separated by 147 nucleotidesUW163_RS10125 and UW163_RS10130 are separated by 83 nucleotidesUW163_RS10130 and UW163_RS10135 are separated by 179 nucleotides UW163_RS10120: UW163_RS10120 - coproporphyrinogen III oxidase, at 2,196,720 to 2,197,628 _RS10120 UW163_RS10125: UW163_RS10125 - phosphoribosylamine--glycine ligase, at 2,197,776 to 2,199,044 _RS10125 UW163_RS10130: UW163_RS10130 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,199,128 to 2,199,853 _RS10130 UW163_RS10135: UW163_RS10135 - ATP-binding protein, at 2,200,033 to 2,201,622 _RS10135 Position (kb) 2197 2198 2199 2200Strain fitness (log2 ratio) -3 -2 -1 0 1at 2197.680 kb on + strandat 2199.130 kb on - strandat 2199.154 kb on - strandat 2199.817 kb on + strandat 2199.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
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2,197,680 + -0.7
2,199,130 - +0.1
2,199,154 - +0.1
2,199,817 + -0.1
2,199,818 - -3.7

Or see this region's nucleotide sequence