Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS03780 and UW163_RS03785 overlap by 4 nucleotides UW163_RS03785 and UW163_RS03790 are separated by 13 nucleotides UW163_RS03790 and UW163_RS03795 are separated by 89 nucleotides
UW163_RS03780: UW163_RS03780 - sensor histidine kinase, at 785,637 to 788,075
_RS03780
UW163_RS03785: UW163_RS03785 - DUF4390 domain-containing protein, at 788,072 to 788,872
_RS03785
UW163_RS03790: UW163_RS03790 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 788,886 to 790,217
_RS03790
UW163_RS03795: UW163_RS03795 - protease, at 790,307 to 791,167
_RS03795
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 787.933 kb on + strand at 787.949 kb on - strand at 788.057 kb on - strand at 788.538 kb on + strand, within UW163_RS03785 at 788.628 kb on + strand, within UW163_RS03785 at 788.763 kb on - strand, within UW163_RS03785 at 788.914 kb on + strand at 788.915 kb on - strand at 789.021 kb on + strand, within UW163_RS03790 at 789.022 kb on - strand, within UW163_RS03790 at 789.098 kb on - strand at 789.098 kb on - strand, within UW163_RS03790 at 789.643 kb on + strand, within UW163_RS03790 at 789.643 kb on + strand, within UW163_RS03790 at 789.643 kb on + strand at 789.772 kb on + strand, within UW163_RS03790 at 789.935 kb on - strand, within UW163_RS03790 at 790.020 kb on - strand, within UW163_RS03790 at 790.020 kb on - strand, within UW163_RS03790 at 790.063 kb on + strand, within UW163_RS03790 at 790.289 kb on + strand at 790.289 kb on + strand at 790.289 kb on + strand at 790.289 kb on + strand at 790.290 kb on - strand at 790.290 kb on - strand at 790.291 kb on + strand at 790.318 kb on - strand at 790.482 kb on + strand, within UW163_RS03795 at 790.813 kb on + strand, within UW163_RS03795 at 790.902 kb on + strand, within UW163_RS03795 at 790.902 kb on + strand, within UW163_RS03795 at 790.902 kb on + strand, within UW163_RS03795 at 790.957 kb on - strand, within UW163_RS03795 at 790.998 kb on + strand, within UW163_RS03795 at 790.998 kb on + strand, within UW163_RS03795 at 790.998 kb on + strand, within UW163_RS03795 at 791.207 kb on + strand at 791.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 787,933 + -1.2 787,949 - +0.1 788,057 - -2.9 788,538 + UW163_RS03785 0.58 -2.2 788,628 + UW163_RS03785 0.69 -1.2 788,763 - UW163_RS03785 0.86 +0.9 788,914 + -1.4 788,915 - -3.9 789,021 + UW163_RS03790 0.10 -0.9 789,022 - UW163_RS03790 0.10 +1.4 789,098 - +0.5 789,098 - UW163_RS03790 0.16 +0.6 789,643 + UW163_RS03790 0.57 -0.0 789,643 + UW163_RS03790 0.57 -1.1 789,643 + -1.8 789,772 + UW163_RS03790 0.67 -0.4 789,935 - UW163_RS03790 0.79 +0.4 790,020 - UW163_RS03790 0.85 -0.1 790,020 - UW163_RS03790 0.85 -0.4 790,063 + UW163_RS03790 0.88 -2.7 790,289 + +1.5 790,289 + -0.6 790,289 + -0.5 790,289 + -3.0 790,290 - -3.4 790,290 - -0.7 790,291 + +1.9 790,318 - -0.1 790,482 + UW163_RS03795 0.20 +0.2 790,813 + UW163_RS03795 0.59 +0.1 790,902 + UW163_RS03795 0.69 +1.0 790,902 + UW163_RS03795 0.69 +0.2 790,902 + UW163_RS03795 0.69 +1.5 790,957 - UW163_RS03795 0.75 +0.5 790,998 + UW163_RS03795 0.80 -0.1 790,998 + UW163_RS03795 0.80 -0.2 790,998 + UW163_RS03795 0.80 +0.7 791,207 + -0.4 791,208 - -1.1
Or see this region's nucleotide sequence