Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS03770 and UW163_RS03775 are separated by 64 nucleotides UW163_RS03775 and UW163_RS03780 are separated by 36 nucleotides
UW163_RS03770: UW163_RS03770 - tRNA-Phe, at 784,738 to 784,813
_RS03770
UW163_RS03775: UW163_RS03775 - two-component system response regulator, at 784,878 to 785,600
_RS03775
UW163_RS03780: UW163_RS03780 - sensor histidine kinase, at 785,637 to 788,075
_RS03780
Position (kb) 784
785
786 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 783.989 kb on - strand at 784.071 kb on - strand at 784.071 kb on - strand at 784.122 kb on - strand at 784.122 kb on - strand at 784.123 kb on + strand at 784.123 kb on + strand at 784.124 kb on - strand at 784.124 kb on - strand at 784.154 kb on - strand at 784.170 kb on + strand at 784.171 kb on - strand at 784.205 kb on - strand at 784.211 kb on + strand at 784.211 kb on + strand at 784.211 kb on + strand at 784.212 kb on - strand at 784.212 kb on - strand at 784.279 kb on - strand at 784.280 kb on + strand at 784.280 kb on + strand at 784.280 kb on + strand at 784.280 kb on + strand at 784.280 kb on + strand at 784.281 kb on - strand at 784.281 kb on - strand at 784.281 kb on - strand at 784.281 kb on - strand at 784.281 kb on - strand at 784.293 kb on - strand at 784.305 kb on + strand at 784.305 kb on + strand at 784.306 kb on - strand at 784.306 kb on - strand at 784.411 kb on + strand at 784.411 kb on + strand at 784.411 kb on + strand at 784.412 kb on - strand at 784.412 kb on - strand at 784.571 kb on + strand at 784.571 kb on + strand at 784.572 kb on - strand at 784.643 kb on + strand at 784.643 kb on + strand at 784.644 kb on - strand at 784.644 kb on - strand at 784.644 kb on - strand at 784.645 kb on - strand at 784.732 kb on + strand at 784.732 kb on + strand at 785.612 kb on - strand at 785.659 kb on - strand at 785.659 kb on - strand at 785.659 kb on - strand at 786.169 kb on + strand, within UW163_RS03780 at 786.421 kb on + strand, within UW163_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 783,989 - -0.2 784,071 - -0.3 784,071 - +2.5 784,122 - -0.3 784,122 - -1.1 784,123 + +1.2 784,123 + -0.0 784,124 - -1.4 784,124 - +0.2 784,154 - +0.9 784,170 + -2.2 784,171 - +0.1 784,205 - +2.0 784,211 + -0.2 784,211 + +0.0 784,211 + +2.5 784,212 - +0.3 784,212 - -0.2 784,279 - +0.5 784,280 + -0.1 784,280 + -0.3 784,280 + -0.5 784,280 + -0.1 784,280 + -0.2 784,281 - -0.9 784,281 - +1.0 784,281 - -1.3 784,281 - +0.3 784,281 - +0.5 784,293 - -1.1 784,305 + -0.0 784,305 + -1.6 784,306 - -0.0 784,306 - +1.5 784,411 + -0.5 784,411 + +0.0 784,411 + -2.9 784,412 - -0.4 784,412 - -0.1 784,571 + +0.8 784,571 + +0.5 784,572 - -0.2 784,643 + +0.5 784,643 + -0.1 784,644 - -0.7 784,644 - -0.1 784,644 - +0.2 784,645 - -0.4 784,732 + +0.5 784,732 + +0.1 785,612 - -0.3 785,659 - -0.4 785,659 - +0.4 785,659 - -0.3 786,169 + UW163_RS03780 0.22 -4.4 786,421 + UW163_RS03780 0.32 -2.4
Or see this region's nucleotide sequence