Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01760 and UW163_RS01765 are separated by 21 nucleotides UW163_RS01765 and UW163_RS01770 are separated by 2 nucleotides
UW163_RS01760: UW163_RS01760 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 367,357 to 368,751
_RS01760
UW163_RS01765: UW163_RS01765 - PhoH family protein, at 368,773 to 369,765
_RS01765
UW163_RS01770: UW163_RS01770 - rRNA maturation RNAse YbeY, at 369,768 to 370,532
_RS01770
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.832 kb on - strand, within UW163_RS01760 at 367.840 kb on + strand, within UW163_RS01760 at 367.840 kb on + strand, within UW163_RS01760 at 367.841 kb on - strand, within UW163_RS01760 at 367.841 kb on - strand, within UW163_RS01760 at 367.856 kb on - strand, within UW163_RS01760 at 367.856 kb on - strand, within UW163_RS01760 at 367.970 kb on - strand, within UW163_RS01760 at 367.970 kb on - strand, within UW163_RS01760 at 367.970 kb on - strand, within UW163_RS01760 at 367.970 kb on - strand, within UW163_RS01760 at 368.038 kb on + strand, within UW163_RS01760 at 368.122 kb on + strand, within UW163_RS01760 at 368.210 kb on - strand, within UW163_RS01760 at 368.224 kb on + strand, within UW163_RS01760 at 368.224 kb on + strand, within UW163_RS01760 at 368.224 kb on + strand, within UW163_RS01760 at 368.225 kb on - strand, within UW163_RS01760 at 368.380 kb on + strand, within UW163_RS01760 at 368.380 kb on + strand, within UW163_RS01760 at 368.680 kb on + strand at 368.681 kb on - strand at 368.749 kb on + strand at 368.749 kb on + strand at 368.749 kb on + strand at 368.750 kb on - strand at 368.750 kb on - strand at 368.965 kb on + strand, within UW163_RS01765 at 368.966 kb on - strand, within UW163_RS01765 at 368.966 kb on - strand, within UW163_RS01765 at 369.049 kb on + strand, within UW163_RS01765 at 369.154 kb on + strand at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.220 kb on + strand, within UW163_RS01765 at 369.221 kb on - strand, within UW163_RS01765 at 369.221 kb on - strand, within UW163_RS01765 at 369.356 kb on - strand, within UW163_RS01765 at 369.370 kb on + strand, within UW163_RS01765 at 369.370 kb on + strand, within UW163_RS01765 at 369.370 kb on + strand, within UW163_RS01765 at 369.371 kb on - strand, within UW163_RS01765 at 369.454 kb on + strand, within UW163_RS01765 at 369.454 kb on + strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.455 kb on - strand, within UW163_RS01765 at 369.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 367,832 - UW163_RS01760 0.34 -0.6 367,840 + UW163_RS01760 0.35 -0.4 367,840 + UW163_RS01760 0.35 +0.4 367,841 - UW163_RS01760 0.35 -0.4 367,841 - UW163_RS01760 0.35 -0.1 367,856 - UW163_RS01760 0.36 -0.1 367,856 - UW163_RS01760 0.36 -0.2 367,970 - UW163_RS01760 0.44 -0.3 367,970 - UW163_RS01760 0.44 -1.3 367,970 - UW163_RS01760 0.44 +0.2 367,970 - UW163_RS01760 0.44 -1.3 368,038 + UW163_RS01760 0.49 -1.5 368,122 + UW163_RS01760 0.55 -0.0 368,210 - UW163_RS01760 0.61 +0.3 368,224 + UW163_RS01760 0.62 +0.9 368,224 + UW163_RS01760 0.62 +0.7 368,224 + UW163_RS01760 0.62 -1.2 368,225 - UW163_RS01760 0.62 -1.0 368,380 + UW163_RS01760 0.73 -0.1 368,380 + UW163_RS01760 0.73 +2.1 368,680 + +0.1 368,681 - -0.3 368,749 + +1.4 368,749 + -1.6 368,749 + -1.7 368,750 - +0.5 368,750 - +0.8 368,965 + UW163_RS01765 0.19 -0.7 368,966 - UW163_RS01765 0.19 -0.2 368,966 - UW163_RS01765 0.19 +0.7 369,049 + UW163_RS01765 0.28 +0.2 369,154 + -0.2 369,220 + UW163_RS01765 0.45 -0.4 369,220 + UW163_RS01765 0.45 +0.7 369,220 + UW163_RS01765 0.45 -0.1 369,220 + UW163_RS01765 0.45 +0.8 369,220 + UW163_RS01765 0.45 +0.2 369,221 - UW163_RS01765 0.45 +0.4 369,221 - UW163_RS01765 0.45 +0.6 369,356 - UW163_RS01765 0.59 +1.4 369,370 + UW163_RS01765 0.60 +1.0 369,370 + UW163_RS01765 0.60 -0.9 369,370 + UW163_RS01765 0.60 +0.5 369,371 - UW163_RS01765 0.60 -0.4 369,454 + UW163_RS01765 0.69 -1.6 369,454 + UW163_RS01765 0.69 +1.4 369,455 - UW163_RS01765 0.69 -1.9 369,455 - UW163_RS01765 0.69 -1.5 369,455 - UW163_RS01765 0.69 -1.4 369,455 - UW163_RS01765 0.69 -0.6 369,731 - -0.2
Or see this region's nucleotide sequence