Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01745 and UW163_RS01750 are separated by 111 nucleotides UW163_RS01750 and UW163_RS01755 are separated by 90 nucleotides UW163_RS01755 and UW163_RS01760 are separated by 68 nucleotides
UW163_RS01745: UW163_RS01745 - OmpW family protein, at 364,820 to 365,728
_RS01745
UW163_RS01750: UW163_RS01750 - NAD(P)/FAD-dependent oxidoreductase, at 365,840 to 366,841
_RS01750
UW163_RS01755: UW163_RS01755 - hypothetical protein, at 366,932 to 367,288
_RS01755
UW163_RS01760: UW163_RS01760 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 367,357 to 368,751
_RS01760
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 364.936 kb on + strand, within UW163_RS01745 at 364.979 kb on + strand, within UW163_RS01745 at 364.979 kb on + strand, within UW163_RS01745 at 364.980 kb on - strand, within UW163_RS01745 at 364.980 kb on - strand, within UW163_RS01745 at 365.130 kb on + strand, within UW163_RS01745 at 365.210 kb on + strand, within UW163_RS01745 at 365.210 kb on + strand, within UW163_RS01745 at 365.337 kb on - strand, within UW163_RS01745 at 365.337 kb on - strand, within UW163_RS01745 at 365.393 kb on + strand, within UW163_RS01745 at 365.558 kb on + strand, within UW163_RS01745 at 365.600 kb on + strand, within UW163_RS01745 at 365.600 kb on + strand, within UW163_RS01745 at 365.600 kb on + strand, within UW163_RS01745 at 365.934 kb on - strand at 365.979 kb on + strand, within UW163_RS01750 at 365.999 kb on + strand, within UW163_RS01750 at 366.404 kb on + strand, within UW163_RS01750 at 366.865 kb on + strand at 366.865 kb on + strand at 366.868 kb on + strand at 366.868 kb on + strand at 366.868 kb on + strand at 366.868 kb on + strand at 367.205 kb on + strand, within UW163_RS01755 at 367.206 kb on - strand, within UW163_RS01755 at 367.206 kb on - strand, within UW163_RS01755 at 367.221 kb on - strand, within UW163_RS01755 at 367.221 kb on - strand, within UW163_RS01755 at 367.221 kb on - strand, within UW163_RS01755 at 367.221 kb on - strand, within UW163_RS01755 at 367.262 kb on + strand at 367.262 kb on + strand at 367.262 kb on + strand at 367.262 kb on + strand at 367.263 kb on - strand at 367.263 kb on - strand at 367.286 kb on + strand at 367.403 kb on - strand at 367.645 kb on + strand, within UW163_RS01760 at 367.645 kb on + strand, within UW163_RS01760 at 367.832 kb on - strand, within UW163_RS01760 at 367.840 kb on + strand, within UW163_RS01760 at 367.840 kb on + strand, within UW163_RS01760 at 367.841 kb on - strand, within UW163_RS01760 at 367.841 kb on - strand, within UW163_RS01760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 364,936 + UW163_RS01745 0.13 -3.1 364,979 + UW163_RS01745 0.17 +0.1 364,979 + UW163_RS01745 0.17 -0.4 364,980 - UW163_RS01745 0.18 -0.8 364,980 - UW163_RS01745 0.18 +0.4 365,130 + UW163_RS01745 0.34 -0.2 365,210 + UW163_RS01745 0.43 +0.8 365,210 + UW163_RS01745 0.43 +0.3 365,337 - UW163_RS01745 0.57 +0.1 365,337 - UW163_RS01745 0.57 +0.4 365,393 + UW163_RS01745 0.63 +0.4 365,558 + UW163_RS01745 0.81 -0.1 365,600 + UW163_RS01745 0.86 -1.2 365,600 + UW163_RS01745 0.86 -0.3 365,600 + UW163_RS01745 0.86 -0.0 365,934 - +1.7 365,979 + UW163_RS01750 0.14 -2.3 365,999 + UW163_RS01750 0.16 -2.0 366,404 + UW163_RS01750 0.56 -1.5 366,865 + +0.9 366,865 + -0.8 366,868 + +0.1 366,868 + +0.8 366,868 + -0.4 366,868 + +0.5 367,205 + UW163_RS01755 0.76 +1.2 367,206 - UW163_RS01755 0.77 +1.0 367,206 - UW163_RS01755 0.77 +0.7 367,221 - UW163_RS01755 0.81 -0.4 367,221 - UW163_RS01755 0.81 +0.2 367,221 - UW163_RS01755 0.81 +1.0 367,221 - UW163_RS01755 0.81 -0.0 367,262 + -1.6 367,262 + -0.2 367,262 + +0.8 367,262 + +0.7 367,263 - +0.4 367,263 - -0.8 367,286 + -0.4 367,403 - -0.1 367,645 + UW163_RS01760 0.21 -0.4 367,645 + UW163_RS01760 0.21 -0.2 367,832 - UW163_RS01760 0.34 -0.6 367,840 + UW163_RS01760 0.35 -0.4 367,840 + UW163_RS01760 0.35 +0.4 367,841 - UW163_RS01760 0.35 -0.4 367,841 - UW163_RS01760 0.35 -0.1
Or see this region's nucleotide sequence