Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS01515 and UW163_RS01520 are separated by 81 nucleotides UW163_RS01520 and UW163_RS01525 overlap by 4 nucleotides UW163_RS01525 and UW163_RS24325 overlap by 4 nucleotides UW163_RS24325 and UW163_RS01530 overlap by 4 nucleotides
UW163_RS01515: UW163_RS01515 - damage-inducible protein, at 305,495 to 309,829
_RS01515
UW163_RS01520: UW163_RS01520 - IS21 family transposase, at 309,911 to 310,927
_RS01520
UW163_RS01525: UW163_RS01525 - transposase, at 310,924 to 311,712
_RS01525
UW163_RS24325: UW163_RS24325 - hypothetical protein, at 311,709 to 311,927
_RS24325
UW163_RS01530: UW163_RS01530 - hypothetical protein, at 311,924 to 312,448
_RS01530
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 309.017 kb on + strand, within UW163_RS01515 at 309.017 kb on + strand, within UW163_RS01515 at 309.018 kb on - strand, within UW163_RS01515 at 309.018 kb on - strand, within UW163_RS01515 at 309.018 kb on - strand, within UW163_RS01515 at 309.064 kb on + strand, within UW163_RS01515 at 309.065 kb on - strand, within UW163_RS01515 at 309.065 kb on - strand, within UW163_RS01515 at 309.065 kb on - strand, within UW163_RS01515 at 309.073 kb on + strand, within UW163_RS01515 at 309.074 kb on - strand, within UW163_RS01515 at 309.103 kb on + strand, within UW163_RS01515 at 309.142 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.158 kb on + strand, within UW163_RS01515 at 309.159 kb on - strand, within UW163_RS01515 at 309.159 kb on - strand, within UW163_RS01515 at 309.159 kb on - strand, within UW163_RS01515 at 309.159 kb on - strand, within UW163_RS01515 at 309.159 kb on - strand, within UW163_RS01515 at 309.159 kb on - strand, within UW163_RS01515 at 309.162 kb on + strand, within UW163_RS01515 at 309.162 kb on + strand, within UW163_RS01515 at 309.162 kb on + strand, within UW163_RS01515 at 309.162 kb on + strand, within UW163_RS01515 at 309.162 kb on + strand, within UW163_RS01515 at 309.162 kb on + strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.163 kb on - strand, within UW163_RS01515 at 309.169 kb on - strand, within UW163_RS01515 at 309.169 kb on - strand, within UW163_RS01515 at 309.248 kb on + strand, within UW163_RS01515 at 309.248 kb on + strand, within UW163_RS01515 at 309.248 kb on + strand, within UW163_RS01515 at 309.248 kb on + strand, within UW163_RS01515 at 309.248 kb on + strand, within UW163_RS01515 at 309.248 kb on + strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.249 kb on - strand, within UW163_RS01515 at 309.267 kb on + strand, within UW163_RS01515 at 309.267 kb on + strand, within UW163_RS01515 at 309.267 kb on + strand, within UW163_RS01515 at 309.268 kb on - strand, within UW163_RS01515 at 309.268 kb on - strand, within UW163_RS01515 at 309.268 kb on - strand, within UW163_RS01515 at 309.268 kb on - strand, within UW163_RS01515 at 309.268 kb on - strand, within UW163_RS01515 at 309.302 kb on + strand, within UW163_RS01515 at 309.302 kb on + strand, within UW163_RS01515 at 309.302 kb on + strand, within UW163_RS01515 at 309.303 kb on - strand, within UW163_RS01515 at 309.303 kb on - strand, within UW163_RS01515 at 309.321 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.322 kb on + strand, within UW163_RS01515 at 309.323 kb on - strand, within UW163_RS01515 at 309.323 kb on - strand, within UW163_RS01515 at 309.466 kb on + strand at 309.467 kb on - strand at 309.491 kb on + strand at 309.491 kb on + strand at 309.491 kb on + strand at 309.491 kb on + strand at 309.492 kb on - strand at 309.492 kb on - strand at 309.492 kb on - strand at 309.492 kb on - strand at 309.493 kb on - strand at 309.518 kb on + strand at 309.519 kb on - strand at 309.519 kb on - strand at 309.519 kb on - strand at 309.519 kb on - strand at 309.519 kb on - strand at 309.549 kb on - strand at 309.549 kb on - strand at 309.549 kb on - strand at 309.565 kb on - strand at 309.613 kb on + strand at 309.613 kb on + strand at 309.613 kb on + strand at 309.614 kb on - strand at 309.614 kb on - strand at 309.614 kb on - strand at 309.663 kb on + strand at 309.663 kb on + strand at 309.663 kb on + strand at 309.664 kb on - strand at 309.664 kb on - strand at 309.664 kb on - strand at 309.664 kb on - strand at 309.692 kb on + strand at 309.693 kb on - strand at 309.693 kb on - strand at 309.704 kb on + strand at 309.704 kb on + strand at 309.704 kb on + strand at 309.705 kb on - strand at 309.710 kb on + strand at 309.711 kb on - strand at 309.711 kb on - strand at 309.711 kb on - strand at 309.711 kb on - strand at 309.711 kb on - strand at 309.712 kb on - strand at 309.715 kb on + strand at 309.715 kb on + strand at 309.715 kb on + strand at 309.716 kb on - strand at 309.716 kb on - strand at 309.716 kb on - strand at 309.717 kb on + strand at 309.717 kb on + strand at 309.718 kb on - strand at 309.718 kb on - strand at 309.718 kb on - strand at 309.789 kb on + strand at 309.789 kb on + strand at 309.789 kb on + strand at 309.790 kb on - strand at 309.805 kb on + strand at 309.805 kb on + strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.846 kb on - strand at 309.846 kb on - strand at 309.869 kb on - strand at 311.837 kb on + strand, within UW163_RS24325 at 311.837 kb on + strand, within UW163_RS24325 at 311.837 kb on + strand, within UW163_RS24325 at 311.837 kb on + strand, within UW163_RS24325 at 311.837 kb on + strand, within UW163_RS24325 at 311.837 kb on + strand, within UW163_RS24325 at 311.837 kb on + strand, within UW163_RS24325 at 311.838 kb on - strand, within UW163_RS24325 at 311.838 kb on - strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.840 kb on + strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.841 kb on - strand, within UW163_RS24325 at 311.871 kb on - strand, within UW163_RS24325 at 311.882 kb on + strand, within UW163_RS24325 at 311.882 kb on + strand, within UW163_RS24325 at 311.882 kb on + strand, within UW163_RS24325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct remove 309,017 + UW163_RS01515 0.81 -0.7 309,017 + UW163_RS01515 0.81 -2.2 309,018 - UW163_RS01515 0.81 -0.7 309,018 - UW163_RS01515 0.81 -1.5 309,018 - UW163_RS01515 0.81 -0.3 309,064 + UW163_RS01515 0.82 -0.5 309,065 - UW163_RS01515 0.82 -0.0 309,065 - UW163_RS01515 0.82 -1.0 309,065 - UW163_RS01515 0.82 -0.5 309,073 + UW163_RS01515 0.83 -0.2 309,074 - UW163_RS01515 0.83 +0.8 309,103 + UW163_RS01515 0.83 +0.3 309,142 + UW163_RS01515 0.84 +0.6 309,158 + UW163_RS01515 0.84 +0.1 309,158 + UW163_RS01515 0.84 -0.9 309,158 + UW163_RS01515 0.84 +1.0 309,158 + UW163_RS01515 0.84 -0.0 309,158 + UW163_RS01515 0.84 -1.5 309,158 + UW163_RS01515 0.84 +0.9 309,158 + UW163_RS01515 0.84 -0.9 309,159 - UW163_RS01515 0.85 +0.4 309,159 - UW163_RS01515 0.85 -3.6 309,159 - UW163_RS01515 0.85 +1.0 309,159 - UW163_RS01515 0.85 +0.8 309,159 - UW163_RS01515 0.85 -0.6 309,159 - UW163_RS01515 0.85 -1.0 309,162 + UW163_RS01515 0.85 +0.0 309,162 + UW163_RS01515 0.85 -0.1 309,162 + UW163_RS01515 0.85 -0.4 309,162 + UW163_RS01515 0.85 +0.2 309,162 + UW163_RS01515 0.85 -0.2 309,162 + UW163_RS01515 0.85 +0.3 309,163 - UW163_RS01515 0.85 -0.4 309,163 - UW163_RS01515 0.85 +0.0 309,163 - +3.6 309,163 - UW163_RS01515 0.85 -0.2 309,163 - UW163_RS01515 0.85 -1.5 309,163 - UW163_RS01515 0.85 +1.0 309,163 - UW163_RS01515 0.85 -0.0 309,163 - UW163_RS01515 0.85 -1.5 309,163 - UW163_RS01515 0.85 +0.0 309,169 - UW163_RS01515 0.85 -0.9 309,169 - UW163_RS01515 0.85 -0.1 309,248 + UW163_RS01515 0.87 +1.2 309,248 + UW163_RS01515 0.87 +0.1 309,248 + UW163_RS01515 0.87 -0.1 309,248 + UW163_RS01515 0.87 +0.0 309,248 + UW163_RS01515 0.87 +1.1 309,248 + UW163_RS01515 0.87 +0.1 309,249 - UW163_RS01515 0.87 -0.1 309,249 - UW163_RS01515 0.87 -1.5 309,249 - UW163_RS01515 0.87 +0.1 309,249 - UW163_RS01515 0.87 +0.3 309,249 - UW163_RS01515 0.87 -0.4 309,249 - UW163_RS01515 0.87 -0.2 309,249 - UW163_RS01515 0.87 +1.0 309,267 + UW163_RS01515 0.87 +0.9 309,267 + UW163_RS01515 0.87 -0.7 309,267 + UW163_RS01515 0.87 +0.3 309,268 - UW163_RS01515 0.87 -1.1 309,268 - UW163_RS01515 0.87 +0.3 309,268 - UW163_RS01515 0.87 -0.8 309,268 - UW163_RS01515 0.87 +0.0 309,268 - UW163_RS01515 0.87 -1.3 309,302 + UW163_RS01515 0.88 -1.5 309,302 + UW163_RS01515 0.88 +0.2 309,302 + UW163_RS01515 0.88 +0.5 309,303 - UW163_RS01515 0.88 +0.2 309,303 - UW163_RS01515 0.88 +0.3 309,321 + UW163_RS01515 0.88 -2.9 309,322 + UW163_RS01515 0.88 -0.1 309,322 + UW163_RS01515 0.88 +0.7 309,322 + UW163_RS01515 0.88 -1.8 309,322 + UW163_RS01515 0.88 +0.0 309,322 + UW163_RS01515 0.88 -0.5 309,322 + UW163_RS01515 0.88 -0.2 309,322 + UW163_RS01515 0.88 +2.0 309,322 + UW163_RS01515 0.88 -1.0 309,323 - UW163_RS01515 0.88 +2.7 309,323 - UW163_RS01515 0.88 +2.3 309,466 + +0.1 309,467 - -0.4 309,491 + +0.1 309,491 + +0.2 309,491 + -0.4 309,491 + -0.4 309,492 - -2.4 309,492 - +0.7 309,492 - -0.1 309,492 - -2.9 309,493 - -0.1 309,518 + -0.8 309,519 - -0.5 309,519 - -1.1 309,519 - -0.5 309,519 - -0.2 309,519 - -0.6 309,549 - +1.2 309,549 - -0.9 309,549 - +0.9 309,565 - +1.4 309,613 + -0.4 309,613 + +1.4 309,613 + -0.8 309,614 - -0.5 309,614 - +0.9 309,614 - -1.1 309,663 + -0.0 309,663 + -0.2 309,663 + -0.0 309,664 - -0.0 309,664 - -0.4 309,664 - +0.4 309,664 - -0.5 309,692 + -1.6 309,693 - +0.0 309,693 - +0.4 309,704 + +0.2 309,704 + -0.0 309,704 + +0.7 309,705 - -0.7 309,710 + +0.7 309,711 - -0.5 309,711 - -0.6 309,711 - +0.3 309,711 - -0.8 309,711 - -0.4 309,712 - +0.4 309,715 + -0.1 309,715 + +0.4 309,715 + -0.3 309,716 - -1.3 309,716 - -0.4 309,716 - +1.0 309,717 + +0.2 309,717 + -1.8 309,718 - -4.2 309,718 - -1.2 309,718 - -0.9 309,789 + -0.2 309,789 + -0.1 309,789 + -0.0 309,790 - +0.3 309,805 + +0.2 309,805 + +0.5 309,806 - +0.4 309,806 - -2.8 309,806 - +0.0 309,806 - +0.0 309,806 - -1.3 309,806 - -0.8 309,846 - +1.1 309,846 - +0.2 309,869 - -0.2 311,837 + UW163_RS24325 0.58 -1.2 311,837 + UW163_RS24325 0.58 -0.4 311,837 + UW163_RS24325 0.58 +0.3 311,837 + UW163_RS24325 0.58 +2.3 311,837 + UW163_RS24325 0.58 +1.3 311,837 + UW163_RS24325 0.58 -0.5 311,837 + UW163_RS24325 0.58 -0.5 311,838 - UW163_RS24325 0.59 +0.4 311,838 - UW163_RS24325 0.59 -0.4 311,840 + UW163_RS24325 0.60 +1.4 311,840 + UW163_RS24325 0.60 -0.8 311,840 + UW163_RS24325 0.60 +0.9 311,840 + UW163_RS24325 0.60 -0.9 311,840 + UW163_RS24325 0.60 +0.3 311,840 + UW163_RS24325 0.60 +0.4 311,840 + UW163_RS24325 0.60 +0.0 311,840 + UW163_RS24325 0.60 -0.9 311,840 + UW163_RS24325 0.60 +0.4 311,840 + UW163_RS24325 0.60 +0.1 311,840 + UW163_RS24325 0.60 +1.2 311,840 + UW163_RS24325 0.60 +0.1 311,841 - UW163_RS24325 0.60 -1.8 311,841 - UW163_RS24325 0.60 +1.6 311,841 - UW163_RS24325 0.60 +0.3 311,841 - UW163_RS24325 0.60 -0.6 311,841 - UW163_RS24325 0.60 +0.1 311,841 - UW163_RS24325 0.60 +0.6 311,841 - UW163_RS24325 0.60 +0.4 311,841 - UW163_RS24325 0.60 +0.6 311,871 - UW163_RS24325 0.74 -0.3 311,882 + UW163_RS24325 0.79 -1.6 311,882 + UW163_RS24325 0.79 +0.2 311,882 + UW163_RS24325 0.79 -0.4
Or see this region's nucleotide sequence