Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_728 and PfGW456L13_729 are separated by 11 nucleotides PfGW456L13_729 and PfGW456L13_730 are separated by 254 nucleotides PfGW456L13_730 and PfGW456L13_731 are separated by 16 nucleotides
PfGW456L13_728 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 827,097 to 828,512
_728
PfGW456L13_729 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 828,524 to 830,332
_729
PfGW456L13_730 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 830,587 to 831,258
_730
PfGW456L13_731 - N-acetylglutamate synthase (EC 2.3.1.1), at 831,275 to 831,721
_731
Position (kb) 828
829
830
831 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.895 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.943 kb on + strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 827.944 kb on - strand, within PfGW456L13_728 at 828.165 kb on + strand, within PfGW456L13_728 at 828.165 kb on + strand, within PfGW456L13_728 at 828.165 kb on + strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.166 kb on - strand, within PfGW456L13_728 at 828.207 kb on + strand, within PfGW456L13_728 at 828.207 kb on + strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.208 kb on - strand, within PfGW456L13_728 at 828.235 kb on - strand, within PfGW456L13_728 at 828.235 kb on - strand, within PfGW456L13_728 at 828.351 kb on + strand, within PfGW456L13_728 at 828.352 kb on - strand, within PfGW456L13_728 at 828.354 kb on + strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.355 kb on - strand, within PfGW456L13_728 at 828.438 kb on + strand at 828.438 kb on + strand at 828.438 kb on + strand at 828.438 kb on + strand at 828.438 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.517 kb on + strand at 828.518 kb on - strand at 828.518 kb on - strand at 828.518 kb on - strand at 828.518 kb on - strand at 828.554 kb on - strand at 828.554 kb on - strand at 828.554 kb on - strand at 828.645 kb on - strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.690 kb on + strand at 828.691 kb on - strand at 828.748 kb on + strand, within PfGW456L13_729 at 828.895 kb on + strand, within PfGW456L13_729 at 828.895 kb on + strand, within PfGW456L13_729 at 828.959 kb on + strand, within PfGW456L13_729 at 828.959 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.331 kb on + strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.332 kb on - strand, within PfGW456L13_729 at 829.337 kb on + strand, within PfGW456L13_729 at 829.337 kb on + strand, within PfGW456L13_729 at 829.337 kb on + strand, within PfGW456L13_729 at 829.338 kb on - strand, within PfGW456L13_729 at 829.338 kb on - strand, within PfGW456L13_729 at 829.338 kb on - strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.355 kb on + strand, within PfGW456L13_729 at 829.356 kb on - strand, within PfGW456L13_729 at 829.356 kb on - strand, within PfGW456L13_729 at 829.356 kb on - strand, within PfGW456L13_729 at 829.598 kb on + strand, within PfGW456L13_729 at 829.599 kb on - strand, within PfGW456L13_729 at 829.628 kb on + strand, within PfGW456L13_729 at 829.628 kb on + strand, within PfGW456L13_729 at 829.629 kb on - strand, within PfGW456L13_729 at 829.629 kb on - strand, within PfGW456L13_729 at 829.805 kb on + strand, within PfGW456L13_729 at 829.805 kb on + strand, within PfGW456L13_729 at 829.805 kb on + strand, within PfGW456L13_729 at 829.805 kb on + strand, within PfGW456L13_729 at 829.805 kb on + strand, within PfGW456L13_729 at 829.805 kb on + strand, within PfGW456L13_729 at 829.967 kb on + strand, within PfGW456L13_729 at 829.967 kb on + strand, within PfGW456L13_729 at 829.968 kb on - strand, within PfGW456L13_729 at 830.021 kb on + strand, within PfGW456L13_729 at 830.021 kb on + strand, within PfGW456L13_729 at 830.021 kb on + strand, within PfGW456L13_729 at 830.022 kb on - strand, within PfGW456L13_729 at 830.022 kb on - strand, within PfGW456L13_729 at 830.022 kb on - strand, within PfGW456L13_729 at 830.258 kb on - strand at 830.335 kb on + strand at 830.336 kb on - strand at 830.336 kb on - strand at 830.347 kb on + strand at 830.348 kb on - strand at 830.357 kb on + strand at 830.357 kb on + strand at 830.357 kb on + strand at 830.357 kb on + strand at 830.357 kb on + strand at 830.358 kb on - strand at 830.358 kb on - strand at 830.358 kb on - strand at 830.358 kb on - strand at 830.359 kb on + strand at 830.360 kb on - strand at 830.360 kb on - strand at 830.390 kb on + strand at 830.390 kb on + strand at 830.390 kb on + strand at 830.538 kb on + strand at 830.538 kb on + strand at 830.538 kb on + strand at 830.539 kb on - strand at 830.539 kb on - strand at 830.539 kb on - strand at 830.539 kb on - strand at 830.569 kb on - strand at 830.569 kb on - strand at 830.789 kb on + strand, within PfGW456L13_730 at 830.789 kb on + strand, within PfGW456L13_730 at 830.870 kb on + strand, within PfGW456L13_730 at 830.871 kb on - strand, within PfGW456L13_730 at 831.020 kb on + strand, within PfGW456L13_730 at 831.021 kb on - strand, within PfGW456L13_730 at 831.098 kb on + strand, within PfGW456L13_730 at 831.098 kb on + strand, within PfGW456L13_730 at 831.099 kb on - strand, within PfGW456L13_730 at 831.099 kb on - strand, within PfGW456L13_730 at 831.099 kb on - strand, within PfGW456L13_730 at 831.191 kb on + strand at 831.191 kb on + strand at 831.191 kb on + strand at 831.191 kb on + strand at 831.192 kb on - strand at 831.192 kb on - strand at 831.192 kb on - strand at 831.192 kb on - strand at 831.192 kb on - strand at 831.192 kb on - strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.276 kb on + strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.277 kb on - strand at 831.278 kb on + strand at 831.278 kb on + strand at 831.278 kb on + strand at 831.278 kb on + strand at 831.278 kb on + strand at 831.278 kb on + strand at 831.279 kb on - strand at 831.279 kb on - strand at 831.327 kb on + strand, within PfGW456L13_731
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 827,699 + PfGW456L13_728 0.43 -1.5 827,699 + PfGW456L13_728 0.43 -3.8 827,699 + PfGW456L13_728 0.43 -2.4 827,699 + PfGW456L13_728 0.43 -2.8 827,700 - PfGW456L13_728 0.43 -1.9 827,700 - PfGW456L13_728 0.43 -1.8 827,700 - PfGW456L13_728 0.43 -2.3 827,853 + PfGW456L13_728 0.53 -1.5 827,853 + PfGW456L13_728 0.53 -0.9 827,853 + PfGW456L13_728 0.53 -2.4 827,853 + PfGW456L13_728 0.53 -1.7 827,853 + PfGW456L13_728 0.53 -2.1 827,854 - PfGW456L13_728 0.53 -1.3 827,854 - PfGW456L13_728 0.53 -1.6 827,854 - PfGW456L13_728 0.53 -0.6 827,854 - PfGW456L13_728 0.53 -1.8 827,854 - PfGW456L13_728 0.53 -2.3 827,854 - PfGW456L13_728 0.53 -1.8 827,854 - PfGW456L13_728 0.53 -3.6 827,895 + PfGW456L13_728 0.56 -1.9 827,943 + PfGW456L13_728 0.60 -2.0 827,943 + PfGW456L13_728 0.60 -2.2 827,943 + PfGW456L13_728 0.60 +0.2 827,943 + PfGW456L13_728 0.60 -3.6 827,943 + PfGW456L13_728 0.60 -2.5 827,943 + PfGW456L13_728 0.60 -0.9 827,943 + PfGW456L13_728 0.60 -2.0 827,943 + PfGW456L13_728 0.60 -1.9 827,944 - PfGW456L13_728 0.60 -2.1 827,944 - PfGW456L13_728 0.60 -1.0 827,944 - PfGW456L13_728 0.60 -2.8 827,944 - PfGW456L13_728 0.60 -3.0 827,944 - PfGW456L13_728 0.60 -4.9 828,165 + PfGW456L13_728 0.75 -2.2 828,165 + PfGW456L13_728 0.75 -2.0 828,165 + PfGW456L13_728 0.75 -1.0 828,166 - PfGW456L13_728 0.75 +0.2 828,166 - PfGW456L13_728 0.75 -2.2 828,166 - PfGW456L13_728 0.75 -3.5 828,166 - PfGW456L13_728 0.75 -1.9 828,166 - PfGW456L13_728 0.75 -2.9 828,207 + PfGW456L13_728 0.78 -3.9 828,207 + PfGW456L13_728 0.78 -1.6 828,208 - PfGW456L13_728 0.78 -1.6 828,208 - PfGW456L13_728 0.78 -2.7 828,208 - PfGW456L13_728 0.78 +0.2 828,208 - PfGW456L13_728 0.78 -3.5 828,208 - PfGW456L13_728 0.78 -2.5 828,235 - PfGW456L13_728 0.80 -1.8 828,235 - PfGW456L13_728 0.80 -3.7 828,351 + PfGW456L13_728 0.89 -2.3 828,352 - PfGW456L13_728 0.89 -1.3 828,354 + PfGW456L13_728 0.89 -0.6 828,355 - PfGW456L13_728 0.89 -2.7 828,355 - PfGW456L13_728 0.89 -2.0 828,355 - PfGW456L13_728 0.89 -2.6 828,355 - PfGW456L13_728 0.89 -1.5 828,438 + -0.5 828,438 + -2.0 828,438 + -0.9 828,438 + -3.1 828,438 + -1.4 828,517 + +0.9 828,517 + +0.2 828,517 + -1.3 828,517 + -1.9 828,517 + -1.0 828,517 + -2.1 828,517 + -0.9 828,518 - -3.5 828,518 - -3.0 828,518 - -3.4 828,518 - -3.0 828,554 - -3.3 828,554 - -1.6 828,554 - -1.4 828,645 - -1.6 828,690 + -2.5 828,690 + -1.0 828,690 + -0.5 828,690 + -2.0 828,690 + -3.4 828,691 - -3.8 828,748 + PfGW456L13_729 0.12 -3.6 828,895 + PfGW456L13_729 0.21 -4.5 828,895 + PfGW456L13_729 0.21 -1.2 828,959 + PfGW456L13_729 0.24 -2.8 828,959 + PfGW456L13_729 0.24 +0.1 829,331 + PfGW456L13_729 0.45 -2.3 829,331 + PfGW456L13_729 0.45 -1.9 829,331 + PfGW456L13_729 0.45 -1.5 829,331 + PfGW456L13_729 0.45 -2.1 829,331 + PfGW456L13_729 0.45 -1.3 829,331 + PfGW456L13_729 0.45 -2.3 829,332 - PfGW456L13_729 0.45 -0.7 829,332 - PfGW456L13_729 0.45 -3.5 829,332 - PfGW456L13_729 0.45 -2.0 829,332 - PfGW456L13_729 0.45 -1.9 829,337 + PfGW456L13_729 0.45 -1.8 829,337 + PfGW456L13_729 0.45 -3.3 829,337 + PfGW456L13_729 0.45 +0.7 829,338 - PfGW456L13_729 0.45 +0.5 829,338 - PfGW456L13_729 0.45 -2.2 829,338 - PfGW456L13_729 0.45 -2.0 829,355 + PfGW456L13_729 0.46 -1.3 829,355 + PfGW456L13_729 0.46 -3.1 829,355 + PfGW456L13_729 0.46 -2.1 829,355 + PfGW456L13_729 0.46 -4.2 829,356 - PfGW456L13_729 0.46 -2.8 829,356 - PfGW456L13_729 0.46 -3.7 829,356 - PfGW456L13_729 0.46 -3.3 829,598 + PfGW456L13_729 0.59 -3.8 829,599 - PfGW456L13_729 0.59 -3.0 829,628 + PfGW456L13_729 0.61 -2.7 829,628 + PfGW456L13_729 0.61 -1.4 829,629 - PfGW456L13_729 0.61 -1.6 829,629 - PfGW456L13_729 0.61 -2.2 829,805 + PfGW456L13_729 0.71 -2.2 829,805 + PfGW456L13_729 0.71 -2.5 829,805 + PfGW456L13_729 0.71 -1.6 829,805 + PfGW456L13_729 0.71 -3.3 829,805 + PfGW456L13_729 0.71 -2.0 829,805 + PfGW456L13_729 0.71 -4.0 829,967 + PfGW456L13_729 0.80 -3.9 829,967 + PfGW456L13_729 0.80 -1.9 829,968 - PfGW456L13_729 0.80 -1.6 830,021 + PfGW456L13_729 0.83 -2.4 830,021 + PfGW456L13_729 0.83 -2.6 830,021 + PfGW456L13_729 0.83 -1.8 830,022 - PfGW456L13_729 0.83 -1.2 830,022 - PfGW456L13_729 0.83 -1.3 830,022 - PfGW456L13_729 0.83 -2.7 830,258 - -2.7 830,335 + -0.2 830,336 - -0.7 830,336 - -0.9 830,347 + -1.3 830,348 - -1.2 830,357 + -0.4 830,357 + +1.0 830,357 + -0.2 830,357 + -1.5 830,357 + -0.3 830,358 - -0.4 830,358 - -0.9 830,358 - +1.3 830,358 - -0.9 830,359 + -0.1 830,360 - -2.3 830,360 - -0.3 830,390 + -0.9 830,390 + +0.1 830,390 + -0.5 830,538 + -1.0 830,538 + -0.2 830,538 + -1.0 830,539 - -0.0 830,539 - -0.0 830,539 - -0.6 830,539 - +0.2 830,569 - -0.2 830,569 - -0.3 830,789 + PfGW456L13_730 0.30 +0.9 830,789 + PfGW456L13_730 0.30 +0.0 830,870 + PfGW456L13_730 0.42 -0.9 830,871 - PfGW456L13_730 0.42 -1.9 831,020 + PfGW456L13_730 0.64 -0.2 831,021 - PfGW456L13_730 0.65 +0.6 831,098 + PfGW456L13_730 0.76 +0.9 831,098 + PfGW456L13_730 0.76 +0.3 831,099 - PfGW456L13_730 0.76 -0.2 831,099 - PfGW456L13_730 0.76 -0.7 831,099 - PfGW456L13_730 0.76 +1.1 831,191 + +0.3 831,191 + -0.6 831,191 + -0.3 831,191 + +0.0 831,192 - +0.6 831,192 - -0.3 831,192 - -0.8 831,192 - -0.6 831,192 - -0.3 831,192 - -1.0 831,276 + +0.6 831,276 + +0.7 831,276 + +0.4 831,276 + +0.0 831,276 + -0.6 831,276 + +0.1 831,276 + +0.6 831,276 + -1.0 831,276 + -1.3 831,276 + +0.5 831,276 + +0.4 831,276 + +0.1 831,276 + -0.3 831,276 + -0.7 831,276 + -1.6 831,276 + +1.1 831,276 + -0.6 831,277 - +2.3 831,277 - -0.1 831,277 - -1.2 831,277 - +0.3 831,277 - +0.8 831,277 - -0.8 831,277 - -1.3 831,277 - +0.2 831,277 - -0.9 831,277 - -0.2 831,277 - +0.9 831,277 - +0.1 831,277 - +0.2 831,277 - +0.4 831,277 - +0.0 831,277 - -0.2 831,278 + +0.0 831,278 + -0.1 831,278 + +0.7 831,278 + -0.1 831,278 + -0.3 831,278 + -0.6 831,279 - +0.2 831,279 - -0.2 831,327 + PfGW456L13_731 0.12 -0.5
Or see this region's nucleotide sequence