Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_671 and PfGW456L13_672 overlap by 4 nucleotides PfGW456L13_672 and PfGW456L13_673 are separated by 57 nucleotides PfGW456L13_673 and PfGW456L13_674 are separated by 9 nucleotides
PfGW456L13_671 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 763,742 to 765,640
_671
PfGW456L13_672 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 765,637 to 766,281
_672
PfGW456L13_673 - Chromosome (plasmid) partitioning protein ParA, at 766,339 to 767,097
_673
PfGW456L13_674 - Chromosome (plasmid) partitioning protein ParB, at 767,107 to 767,979
_674
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.756 kb on - strand, within PfGW456L13_672 at 765.772 kb on + strand, within PfGW456L13_672 at 765.773 kb on - strand, within PfGW456L13_672 at 765.773 kb on - strand, within PfGW456L13_672 at 765.773 kb on - strand, within PfGW456L13_672 at 765.891 kb on + strand, within PfGW456L13_672 at 765.891 kb on + strand, within PfGW456L13_672 at 765.891 kb on + strand, within PfGW456L13_672 at 766.018 kb on - strand, within PfGW456L13_672 at 766.018 kb on - strand, within PfGW456L13_672 at 766.104 kb on + strand, within PfGW456L13_672 at 766.105 kb on - strand, within PfGW456L13_672 at 766.105 kb on - strand, within PfGW456L13_672 at 766.181 kb on + strand, within PfGW456L13_672 at 766.311 kb on - strand at 766.444 kb on - strand, within PfGW456L13_673 at 766.452 kb on - strand, within PfGW456L13_673 at 766.452 kb on - strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.543 kb on + strand, within PfGW456L13_673 at 766.654 kb on + strand, within PfGW456L13_673 at 766.654 kb on + strand, within PfGW456L13_673 at 766.654 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.661 kb on - strand, within PfGW456L13_673 at 766.661 kb on - strand, within PfGW456L13_673 at 766.661 kb on - strand, within PfGW456L13_673 at 766.735 kb on - strand, within PfGW456L13_673 at 766.735 kb on - strand, within PfGW456L13_673 at 766.753 kb on + strand, within PfGW456L13_673 at 766.753 kb on + strand, within PfGW456L13_673 at 766.754 kb on - strand, within PfGW456L13_673 at 766.788 kb on + strand, within PfGW456L13_673 at 766.800 kb on + strand, within PfGW456L13_673 at 766.800 kb on + strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.848 kb on + strand, within PfGW456L13_673 at 766.848 kb on + strand, within PfGW456L13_673 at 766.849 kb on - strand, within PfGW456L13_673 at 766.849 kb on - strand, within PfGW456L13_673 at 766.849 kb on - strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.924 kb on + strand, within PfGW456L13_673 at 766.925 kb on - strand, within PfGW456L13_673 at 766.947 kb on + strand, within PfGW456L13_673 at 766.948 kb on - strand, within PfGW456L13_673 at 766.948 kb on - strand, within PfGW456L13_673 at 766.948 kb on - strand, within PfGW456L13_673 at 766.973 kb on - strand, within PfGW456L13_673 at 766.973 kb on - strand, within PfGW456L13_673 at 766.993 kb on + strand, within PfGW456L13_673 at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.251 kb on + strand, within PfGW456L13_674 at 767.251 kb on + strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.444 kb on + strand, within PfGW456L13_674 at 767.444 kb on + strand, within PfGW456L13_674 at 767.445 kb on - strand, within PfGW456L13_674 at 767.799 kb on + strand, within PfGW456L13_674 at 767.901 kb on + strand at 767.910 kb on + strand at 767.932 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.970 kb on + strand at 768.015 kb on + strand at 768.030 kb on + strand at 768.048 kb on + strand at 768.050 kb on + strand at 768.050 kb on + strand at 768.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 765,756 - PfGW456L13_672 0.18 +1.7 765,772 + PfGW456L13_672 0.21 -0.2 765,773 - PfGW456L13_672 0.21 -0.8 765,773 - PfGW456L13_672 0.21 -1.6 765,773 - PfGW456L13_672 0.21 +1.8 765,891 + PfGW456L13_672 0.39 -0.6 765,891 + PfGW456L13_672 0.39 +0.7 765,891 + PfGW456L13_672 0.39 -1.1 766,018 - PfGW456L13_672 0.59 +1.5 766,018 - PfGW456L13_672 0.59 +0.2 766,104 + PfGW456L13_672 0.72 +0.7 766,105 - PfGW456L13_672 0.73 -1.9 766,105 - PfGW456L13_672 0.73 -1.3 766,181 + PfGW456L13_672 0.84 -1.1 766,311 - +0.0 766,444 - PfGW456L13_673 0.14 -0.3 766,452 - PfGW456L13_673 0.15 -1.2 766,452 - PfGW456L13_673 0.15 +0.1 766,455 + PfGW456L13_673 0.15 -0.3 766,455 + PfGW456L13_673 0.15 -0.8 766,455 + PfGW456L13_673 0.15 -2.2 766,455 + PfGW456L13_673 0.15 -0.4 766,456 - PfGW456L13_673 0.15 -0.2 766,456 - PfGW456L13_673 0.15 -0.3 766,456 - PfGW456L13_673 0.15 -0.8 766,456 - PfGW456L13_673 0.15 -0.2 766,543 + PfGW456L13_673 0.27 -0.8 766,654 + PfGW456L13_673 0.42 -1.9 766,654 + PfGW456L13_673 0.42 -1.3 766,654 + PfGW456L13_673 0.42 -1.3 766,660 + PfGW456L13_673 0.42 -1.0 766,660 + PfGW456L13_673 0.42 -3.3 766,660 + PfGW456L13_673 0.42 -2.3 766,660 + PfGW456L13_673 0.42 -1.4 766,661 - PfGW456L13_673 0.42 -0.2 766,661 - PfGW456L13_673 0.42 -0.4 766,661 - PfGW456L13_673 0.42 -2.1 766,735 - PfGW456L13_673 0.52 -0.4 766,735 - PfGW456L13_673 0.52 -0.2 766,753 + PfGW456L13_673 0.55 -1.7 766,753 + PfGW456L13_673 0.55 -0.7 766,754 - PfGW456L13_673 0.55 -1.4 766,788 + PfGW456L13_673 0.59 -0.8 766,800 + PfGW456L13_673 0.61 +1.1 766,800 + PfGW456L13_673 0.61 -1.0 766,801 - PfGW456L13_673 0.61 -0.8 766,801 - PfGW456L13_673 0.61 -1.3 766,801 - PfGW456L13_673 0.61 -0.9 766,801 - PfGW456L13_673 0.61 +0.5 766,801 - PfGW456L13_673 0.61 -0.5 766,848 + PfGW456L13_673 0.67 -0.3 766,848 + PfGW456L13_673 0.67 -1.2 766,849 - PfGW456L13_673 0.67 -1.2 766,849 - PfGW456L13_673 0.67 +0.7 766,849 - PfGW456L13_673 0.67 -1.1 766,855 + PfGW456L13_673 0.68 -1.0 766,855 + PfGW456L13_673 0.68 -1.0 766,855 + PfGW456L13_673 0.68 -0.9 766,855 + PfGW456L13_673 0.68 -2.1 766,855 + PfGW456L13_673 0.68 -2.8 766,856 - PfGW456L13_673 0.68 -1.6 766,856 - PfGW456L13_673 0.68 -1.7 766,856 - PfGW456L13_673 0.68 -1.0 766,856 - PfGW456L13_673 0.68 -0.1 766,924 + PfGW456L13_673 0.77 -1.4 766,925 - PfGW456L13_673 0.77 -1.1 766,947 + PfGW456L13_673 0.80 -1.1 766,948 - PfGW456L13_673 0.80 -1.4 766,948 - PfGW456L13_673 0.80 -0.8 766,948 - PfGW456L13_673 0.80 -1.0 766,973 - PfGW456L13_673 0.84 +0.1 766,973 - PfGW456L13_673 0.84 -0.3 766,993 + PfGW456L13_673 0.86 +0.2 767,095 + -0.3 767,095 + -0.2 767,095 + -0.2 767,095 + +0.1 767,095 + +0.8 767,095 + -0.2 767,096 - -0.4 767,096 - -0.8 767,096 - -0.3 767,096 - -0.2 767,096 - -0.8 767,096 - -1.2 767,251 + PfGW456L13_674 0.16 -0.5 767,251 + PfGW456L13_674 0.16 -0.7 767,252 - PfGW456L13_674 0.17 -0.8 767,252 - PfGW456L13_674 0.17 -0.8 767,252 - PfGW456L13_674 0.17 -0.4 767,252 - PfGW456L13_674 0.17 -0.4 767,252 - PfGW456L13_674 0.17 +0.8 767,444 + PfGW456L13_674 0.39 -0.9 767,444 + PfGW456L13_674 0.39 -0.4 767,445 - PfGW456L13_674 0.39 -0.8 767,799 + PfGW456L13_674 0.79 -0.5 767,901 + -0.8 767,910 + +0.1 767,932 + +0.3 767,960 + -1.1 767,960 + +0.2 767,960 + -0.3 767,960 + -0.8 767,960 + +0.2 767,970 + -0.8 768,015 + -0.5 768,030 + -0.3 768,048 + -1.3 768,050 + +0.5 768,050 + -1.3 768,079 + +2.2
Or see this region's nucleotide sequence