Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_587

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_586 and PfGW456L13_587 are separated by 166 nucleotidesPfGW456L13_587 and PfGW456L13_588 are separated by 103 nucleotides PfGW456L13_586 - Rtn protein, at 678,632 to 680,155 _586 PfGW456L13_587 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 680,322 to 681,101 _587 PfGW456L13_588 - GGDEF domain protein, at 681,205 to 683,163 _588 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1 2at 679.365 kb on + strand, within PfGW456L13_586at 679.366 kb on - strand, within PfGW456L13_586at 679.366 kb on - strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.464 kb on - strand, within PfGW456L13_586at 679.514 kb on - strand, within PfGW456L13_586at 679.551 kb on + strand, within PfGW456L13_586at 679.551 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.579 kb on - strandat 679.579 kb on - strand, within PfGW456L13_586at 679.579 kb on - strand, within PfGW456L13_586at 679.580 kb on + strand, within PfGW456L13_586at 679.580 kb on + strand, within PfGW456L13_586at 679.580 kb on + strand, within PfGW456L13_586at 679.581 kb on - strand, within PfGW456L13_586at 679.581 kb on - strand, within PfGW456L13_586at 679.581 kb on - strand, within PfGW456L13_586at 679.825 kb on + strand, within PfGW456L13_586at 679.825 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.836 kb on + strand, within PfGW456L13_586at 679.837 kb on - strand, within PfGW456L13_586at 679.837 kb on - strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.842 kb on + strand, within PfGW456L13_586at 679.843 kb on - strand, within PfGW456L13_586at 679.843 kb on - strand, within PfGW456L13_586at 679.843 kb on - strand, within PfGW456L13_586at 679.843 kb on - strand, within PfGW456L13_586at 679.843 kb on - strand, within PfGW456L13_586at 679.843 kb on - strand, within PfGW456L13_586at 679.929 kb on + strand, within PfGW456L13_586at 679.929 kb on + strand, within PfGW456L13_586at 679.929 kb on + strand, within PfGW456L13_586at 679.930 kb on - strand, within PfGW456L13_586at 679.930 kb on - strand, within PfGW456L13_586at 679.953 kb on + strand, within PfGW456L13_586at 679.954 kb on - strand, within PfGW456L13_586at 679.963 kb on + strand, within PfGW456L13_586at 679.963 kb on + strand, within PfGW456L13_586at 679.963 kb on + strand, within PfGW456L13_586at 679.964 kb on - strand, within PfGW456L13_586at 679.964 kb on - strand, within PfGW456L13_586at 679.964 kb on - strand, within PfGW456L13_586at 679.964 kb on - strand, within PfGW456L13_586at 680.129 kb on + strandat 680.129 kb on + strandat 680.129 kb on + strandat 680.130 kb on - strandat 680.130 kb on - strandat 680.130 kb on - strandat 680.130 kb on - strandat 680.130 kb on - strandat 680.130 kb on - strandat 680.159 kb on + strandat 680.160 kb on - strandat 680.179 kb on + strandat 680.179 kb on + strandat 680.179 kb on + strandat 680.180 kb on - strandat 680.218 kb on + strandat 680.218 kb on + strandat 680.218 kb on + strandat 680.218 kb on + strandat 680.218 kb on + strandat 680.219 kb on - strandat 680.219 kb on - strandat 680.262 kb on + strandat 680.262 kb on + strandat 680.263 kb on - strandat 680.265 kb on + strandat 680.276 kb on + strandat 680.277 kb on - strandat 680.279 kb on - strandat 680.349 kb on + strandat 680.467 kb on + strand, within PfGW456L13_587at 680.639 kb on + strand, within PfGW456L13_587at 680.640 kb on - strand, within PfGW456L13_587at 680.640 kb on - strand, within PfGW456L13_587at 680.646 kb on - strand, within PfGW456L13_587at 680.670 kb on + strand, within PfGW456L13_587at 680.687 kb on + strand, within PfGW456L13_587at 680.688 kb on - strand, within PfGW456L13_587at 680.703 kb on + strand, within PfGW456L13_587at 680.703 kb on + strand, within PfGW456L13_587at 680.704 kb on - strand, within PfGW456L13_587at 680.704 kb on - strand, within PfGW456L13_587at 680.704 kb on - strand, within PfGW456L13_587at 680.734 kb on + strand, within PfGW456L13_587at 680.734 kb on + strand, within PfGW456L13_587at 680.735 kb on - strand, within PfGW456L13_587at 680.881 kb on + strand, within PfGW456L13_587at 680.881 kb on + strand, within PfGW456L13_587at 680.881 kb on + strand, within PfGW456L13_587at 680.881 kb on + strand, within PfGW456L13_587at 680.882 kb on - strand, within PfGW456L13_587at 680.882 kb on - strand, within PfGW456L13_587at 680.882 kb on - strand, within PfGW456L13_587at 680.882 kb on - strand, within PfGW456L13_587at 680.882 kb on - strand, within PfGW456L13_587at 680.914 kb on + strand, within PfGW456L13_587at 680.914 kb on + strand, within PfGW456L13_587at 680.915 kb on - strand, within PfGW456L13_587at 680.915 kb on - strand, within PfGW456L13_587at 680.977 kb on + strand, within PfGW456L13_587at 680.977 kb on + strand, within PfGW456L13_587at 680.977 kb on + strand, within PfGW456L13_587at 680.977 kb on + strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 680.978 kb on - strand, within PfGW456L13_587at 681.010 kb on + strand, within PfGW456L13_587at 681.079 kb on - strandat 681.094 kb on + strandat 681.094 kb on + strandat 681.094 kb on + strandat 681.094 kb on + strandat 681.095 kb on - strandat 681.095 kb on - strandat 681.095 kb on - strandat 681.114 kb on + strandat 681.115 kb on - strandat 681.128 kb on + strandat 681.129 kb on - strandat 681.146 kb on + strandat 681.146 kb on + strandat 681.146 kb on + strandat 681.147 kb on - strandat 681.181 kb on + strandat 681.182 kb on - strandat 681.249 kb on - strandat 681.270 kb on + strandat 681.270 kb on + strandat 681.270 kb on + strandat 681.270 kb on + strandat 681.270 kb on + strandat 681.270 kb on + strandat 681.271 kb on - strandat 681.271 kb on - strandat 681.271 kb on - strandat 681.271 kb on - strandat 681.271 kb on - strandat 681.271 kb on - strandat 681.271 kb on - strandat 681.285 kb on + strandat 681.285 kb on + strandat 681.430 kb on + strand, within PfGW456L13_588at 681.430 kb on + strand, within PfGW456L13_588at 681.543 kb on - strand, within PfGW456L13_588at 681.543 kb on - strand, within PfGW456L13_588at 681.543 kb on - strand, within PfGW456L13_588at 681.862 kb on + strand, within PfGW456L13_588at 682.040 kb on + strand, within PfGW456L13_588at 682.040 kb on + strand, within PfGW456L13_588at 682.041 kb on - strand, within PfGW456L13_588

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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679,365 + PfGW456L13_586 0.48 -0.3
679,366 - PfGW456L13_586 0.48 +1.0
679,366 - PfGW456L13_586 0.48 +1.0
679,463 + PfGW456L13_586 0.55 -0.1
679,463 + PfGW456L13_586 0.55 -0.3
679,463 + PfGW456L13_586 0.55 -0.1
679,463 + PfGW456L13_586 0.55 -0.4
679,463 + PfGW456L13_586 0.55 +0.3
679,463 + PfGW456L13_586 0.55 +0.3
679,463 + PfGW456L13_586 0.55 +0.6
679,463 + PfGW456L13_586 0.55 +0.6
679,464 - PfGW456L13_586 0.55 +0.1
679,514 - PfGW456L13_586 0.58 +0.4
679,551 + PfGW456L13_586 0.60 +1.2
679,551 + PfGW456L13_586 0.60 +0.5
679,578 + PfGW456L13_586 0.62 -1.4
679,578 + PfGW456L13_586 0.62 +0.3
679,578 + PfGW456L13_586 0.62 -0.4
679,578 + PfGW456L13_586 0.62 -0.7
679,578 + PfGW456L13_586 0.62 -1.5
679,579 - -0.2
679,579 - PfGW456L13_586 0.62 +0.2
679,579 - PfGW456L13_586 0.62 +0.7
679,580 + PfGW456L13_586 0.62 -0.7
679,580 + PfGW456L13_586 0.62 -0.6
679,580 + PfGW456L13_586 0.62 +0.0
679,581 - PfGW456L13_586 0.62 -0.0
679,581 - PfGW456L13_586 0.62 -0.4
679,581 - PfGW456L13_586 0.62 +0.6
679,825 + PfGW456L13_586 0.78 -0.3
679,825 + PfGW456L13_586 0.78 -0.5
679,836 + PfGW456L13_586 0.79 -1.5
679,836 + PfGW456L13_586 0.79 +1.0
679,836 + PfGW456L13_586 0.79 -1.2
679,836 + PfGW456L13_586 0.79 +0.9
679,836 + PfGW456L13_586 0.79 +0.6
679,836 + PfGW456L13_586 0.79 +0.8
679,836 + PfGW456L13_586 0.79 -0.3
679,836 + PfGW456L13_586 0.79 +0.1
679,836 + PfGW456L13_586 0.79 -2.4
679,837 - PfGW456L13_586 0.79 -0.2
679,837 - PfGW456L13_586 0.79 -0.2
679,842 + PfGW456L13_586 0.79 -0.1
679,842 + PfGW456L13_586 0.79 +0.5
679,842 + PfGW456L13_586 0.79 -0.6
679,842 + PfGW456L13_586 0.79 -0.3
679,842 + PfGW456L13_586 0.79 -0.5
679,842 + PfGW456L13_586 0.79 +0.4
679,842 + PfGW456L13_586 0.79 -0.4
679,842 + PfGW456L13_586 0.79 -0.2
679,843 - PfGW456L13_586 0.79 +0.6
679,843 - PfGW456L13_586 0.79 -0.6
679,843 - PfGW456L13_586 0.79 +0.1
679,843 - PfGW456L13_586 0.79 -0.3
679,843 - PfGW456L13_586 0.79 -0.6
679,843 - PfGW456L13_586 0.79 -0.4
679,929 + PfGW456L13_586 0.85 -0.2
679,929 + PfGW456L13_586 0.85 +0.4
679,929 + PfGW456L13_586 0.85 -0.0
679,930 - PfGW456L13_586 0.85 -0.7
679,930 - PfGW456L13_586 0.85 +0.7
679,953 + PfGW456L13_586 0.87 +0.5
679,954 - PfGW456L13_586 0.87 -0.3
679,963 + PfGW456L13_586 0.87 +0.1
679,963 + PfGW456L13_586 0.87 -0.4
679,963 + PfGW456L13_586 0.87 -1.3
679,964 - PfGW456L13_586 0.87 +1.8
679,964 - PfGW456L13_586 0.87 +0.8
679,964 - PfGW456L13_586 0.87 -0.5
679,964 - PfGW456L13_586 0.87 +0.2
680,129 + -0.6
680,129 + +0.8
680,129 + -0.4
680,130 - +0.5
680,130 - -0.2
680,130 - -0.0
680,130 - +0.2
680,130 - -0.2
680,130 - -0.1
680,159 + -0.1
680,160 - +0.0
680,179 + +0.8
680,179 + -0.8
680,179 + +0.3
680,180 - +0.7
680,218 + +0.5
680,218 + +0.5
680,218 + +0.1
680,218 + -0.2
680,218 + -0.2
680,219 - +0.2
680,219 - -0.8
680,262 + -0.3
680,262 + -0.4
680,263 - +0.3
680,265 + -1.5
680,276 + -0.3
680,277 - +0.0
680,279 - +0.8
680,349 + -0.5
680,467 + PfGW456L13_587 0.19 +0.2
680,639 + PfGW456L13_587 0.41 -1.2
680,640 - PfGW456L13_587 0.41 -1.4
680,640 - PfGW456L13_587 0.41 +0.5
680,646 - PfGW456L13_587 0.42 +1.3
680,670 + PfGW456L13_587 0.45 -1.3
680,687 + PfGW456L13_587 0.47 +0.1
680,688 - PfGW456L13_587 0.47 +0.2
680,703 + PfGW456L13_587 0.49 -1.1
680,703 + PfGW456L13_587 0.49 +0.1
680,704 - PfGW456L13_587 0.49 -0.6
680,704 - PfGW456L13_587 0.49 +0.3
680,704 - PfGW456L13_587 0.49 -0.2
680,734 + PfGW456L13_587 0.53 +0.4
680,734 + PfGW456L13_587 0.53 +0.8
680,735 - PfGW456L13_587 0.53 -0.4
680,881 + PfGW456L13_587 0.72 +0.1
680,881 + PfGW456L13_587 0.72 +0.2
680,881 + PfGW456L13_587 0.72 +0.1
680,881 + PfGW456L13_587 0.72 +0.7
680,882 - PfGW456L13_587 0.72 +0.4
680,882 - PfGW456L13_587 0.72 +0.4
680,882 - PfGW456L13_587 0.72 +0.1
680,882 - PfGW456L13_587 0.72 +0.4
680,882 - PfGW456L13_587 0.72 -0.6
680,914 + PfGW456L13_587 0.76 +0.5
680,914 + PfGW456L13_587 0.76 +0.2
680,915 - PfGW456L13_587 0.76 +0.4
680,915 - PfGW456L13_587 0.76 +0.2
680,977 + PfGW456L13_587 0.84 +0.1
680,977 + PfGW456L13_587 0.84 +0.2
680,977 + PfGW456L13_587 0.84 -1.2
680,977 + PfGW456L13_587 0.84 -0.1
680,978 - PfGW456L13_587 0.84 +1.0
680,978 - PfGW456L13_587 0.84 -0.3
680,978 - PfGW456L13_587 0.84 +0.7
680,978 - PfGW456L13_587 0.84 -0.0
680,978 - PfGW456L13_587 0.84 -0.2
680,978 - PfGW456L13_587 0.84 +0.7
680,978 - PfGW456L13_587 0.84 -0.4
681,010 + PfGW456L13_587 0.88 +0.5
681,079 - +0.6
681,094 + -0.2
681,094 + -1.1
681,094 + -0.5
681,094 + -0.6
681,095 - -0.5
681,095 - +0.8
681,095 - -0.5
681,114 + -0.1
681,115 - -2.0
681,128 + +1.2
681,129 - +0.2
681,146 + -0.6
681,146 + -0.4
681,146 + -0.7
681,147 - +0.2
681,181 + -2.4
681,182 - +1.2
681,249 - -0.0
681,270 + +1.0
681,270 + -0.3
681,270 + -0.1
681,270 + -0.1
681,270 + -0.9
681,270 + -1.2
681,271 - -0.7
681,271 - +0.2
681,271 - +0.6
681,271 - -0.4
681,271 - -0.8
681,271 - -0.8
681,271 - +0.7
681,285 + +0.3
681,285 + +0.0
681,430 + PfGW456L13_588 0.11 -0.9
681,430 + PfGW456L13_588 0.11 -1.0
681,543 - PfGW456L13_588 0.17 -0.5
681,543 - PfGW456L13_588 0.17 -1.2
681,543 - PfGW456L13_588 0.17 +1.2
681,862 + PfGW456L13_588 0.34 +0.2
682,040 + PfGW456L13_588 0.43 +0.4
682,040 + PfGW456L13_588 0.43 -0.3
682,041 - PfGW456L13_588 0.43 -0.3

Or see this region's nucleotide sequence