Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5152

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5151 and PfGW456L13_5152 overlap by 1 nucleotides PfGW456L13_5151 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 5,747,925 to 5,751,614 _5151 PfGW456L13_5152 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 5,751,614 to 5,755,063 _5152 Position (kb) 5751 5752 5753 5754 5755 5756Strain fitness (log2 ratio) -3 -2 -1 0 1at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5754.205 kb on - strand, within PfGW456L13_5152at 5755.031 kb on - strandat 5755.031 kb on - strandat 5755.064 kb on - strandat 5755.082 kb on + strandat 5755.083 kb on - strandat 5755.083 kb on - strandat 5755.083 kb on - strandat 5755.103 kb on + strandat 5755.103 kb on + strandat 5755.104 kb on - strandat 5755.130 kb on + strandat 5755.130 kb on + strandat 5755.130 kb on + strandat 5755.131 kb on - strandat 5755.131 kb on - strandat 5755.131 kb on - strandat 5755.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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5,754,205 - PfGW456L13_5152 0.75 -0.5
5,754,205 - PfGW456L13_5152 0.75 -0.8
5,754,205 - PfGW456L13_5152 0.75 -2.9
5,754,205 - PfGW456L13_5152 0.75 -1.2
5,754,205 - PfGW456L13_5152 0.75 -1.0
5,754,205 - PfGW456L13_5152 0.75 -1.6
5,754,205 - PfGW456L13_5152 0.75 -0.2
5,754,205 - PfGW456L13_5152 0.75 -0.3
5,755,031 - -1.4
5,755,031 - +0.1
5,755,064 - -0.4
5,755,082 + -0.6
5,755,083 - +1.5
5,755,083 - -1.0
5,755,083 - +0.5
5,755,103 + -2.1
5,755,103 + +0.0
5,755,104 - +0.1
5,755,130 + +0.5
5,755,130 + -0.5
5,755,130 + +1.0
5,755,131 - +0.1
5,755,131 - -0.0
5,755,131 - +1.5
5,755,250 - -0.4

Or see this region's nucleotide sequence