Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4897 and PfGW456L13_4898 are separated by 307 nucleotides PfGW456L13_4898 and PfGW456L13_4899 overlap by 4 nucleotides PfGW456L13_4899 and PfGW456L13_4900 overlap by 4 nucleotides PfGW456L13_4900 and PfGW456L13_4901 overlap by 4 nucleotides
PfGW456L13_4897 - Transcriptional regulator, AraC family, at 5,473,005 to 5,474,021
_4897
PfGW456L13_4898 - Inner membrane protein, at 5,474,329 to 5,475,339
_4898
PfGW456L13_4899 - Ferredoxin, 2Fe-2S, at 5,475,336 to 5,475,662
_4899
PfGW456L13_4900 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 5,475,659 to 5,476,321
_4900
PfGW456L13_4901 - Transporter, MFS superfamily, at 5,476,318 to 5,477,649
_4901
Position (kb) 5474
5475
5476 Strain fitness (log2 ratio) -2
-1
0
1 at 5473.438 kb on + strand, within PfGW456L13_4897 at 5473.438 kb on + strand, within PfGW456L13_4897 at 5473.438 kb on + strand, within PfGW456L13_4897 at 5473.439 kb on - strand, within PfGW456L13_4897 at 5473.439 kb on - strand, within PfGW456L13_4897 at 5473.439 kb on - strand, within PfGW456L13_4897 at 5473.486 kb on - strand, within PfGW456L13_4897 at 5473.719 kb on + strand, within PfGW456L13_4897 at 5473.719 kb on + strand, within PfGW456L13_4897 at 5473.719 kb on + strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.888 kb on - strand, within PfGW456L13_4897 at 5473.888 kb on - strand, within PfGW456L13_4897 at 5473.888 kb on - strand, within PfGW456L13_4897 at 5473.921 kb on - strand at 5474.053 kb on + strand at 5474.053 kb on + strand at 5474.053 kb on + strand at 5474.053 kb on + strand at 5474.093 kb on + strand at 5474.094 kb on - strand at 5474.094 kb on - strand at 5474.128 kb on + strand at 5474.135 kb on - strand at 5474.137 kb on + strand at 5474.137 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.198 kb on - strand at 5474.198 kb on - strand at 5474.198 kb on - strand at 5474.252 kb on - strand at 5474.305 kb on - strand at 5474.816 kb on + strand, within PfGW456L13_4898 at 5474.817 kb on - strand, within PfGW456L13_4898 at 5475.322 kb on - strand at 5475.322 kb on - strand at 5475.322 kb on - strand at 5475.368 kb on + strand at 5476.076 kb on + strand, within PfGW456L13_4900 at 5476.154 kb on + strand, within PfGW456L13_4900 at 5476.283 kb on - strand at 5476.283 kb on - strand at 5476.283 kb on - strand at 5476.303 kb on + strand at 5476.303 kb on + strand at 5476.303 kb on + strand at 5476.303 kb on + strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 5,473,438 + PfGW456L13_4897 0.43 -0.6 5,473,438 + PfGW456L13_4897 0.43 +1.0 5,473,438 + PfGW456L13_4897 0.43 +0.8 5,473,439 - PfGW456L13_4897 0.43 -0.4 5,473,439 - PfGW456L13_4897 0.43 -0.6 5,473,439 - PfGW456L13_4897 0.43 -1.2 5,473,486 - PfGW456L13_4897 0.47 +0.2 5,473,719 + PfGW456L13_4897 0.70 +0.0 5,473,719 + PfGW456L13_4897 0.70 -0.5 5,473,719 + PfGW456L13_4897 0.70 +0.5 5,473,720 - PfGW456L13_4897 0.70 +0.3 5,473,720 - PfGW456L13_4897 0.70 +0.4 5,473,720 - PfGW456L13_4897 0.70 +0.6 5,473,720 - PfGW456L13_4897 0.70 +0.7 5,473,720 - PfGW456L13_4897 0.70 -0.7 5,473,887 + PfGW456L13_4897 0.87 -0.4 5,473,887 + PfGW456L13_4897 0.87 -0.6 5,473,887 + PfGW456L13_4897 0.87 +0.1 5,473,887 + PfGW456L13_4897 0.87 +0.4 5,473,888 - PfGW456L13_4897 0.87 -0.4 5,473,888 - PfGW456L13_4897 0.87 +0.5 5,473,888 - PfGW456L13_4897 0.87 +0.9 5,473,921 - +0.2 5,474,053 + -1.1 5,474,053 + +0.6 5,474,053 + +0.0 5,474,053 + -0.3 5,474,093 + -0.1 5,474,094 - +1.6 5,474,094 - -0.5 5,474,128 + -2.5 5,474,135 - +0.9 5,474,137 + -0.0 5,474,137 + -0.0 5,474,197 + +1.3 5,474,197 + -0.6 5,474,197 + -0.5 5,474,197 + -0.0 5,474,197 + -0.5 5,474,197 + -0.2 5,474,197 + +0.3 5,474,197 + -0.3 5,474,198 - +0.8 5,474,198 - +0.8 5,474,198 - +1.2 5,474,252 - +0.4 5,474,305 - -0.2 5,474,816 + PfGW456L13_4898 0.48 -0.9 5,474,817 - PfGW456L13_4898 0.48 -1.6 5,475,322 - +0.7 5,475,322 - +0.2 5,475,322 - +0.4 5,475,368 + -0.1 5,476,076 + PfGW456L13_4900 0.63 +0.5 5,476,154 + PfGW456L13_4900 0.75 +0.2 5,476,283 - -0.4 5,476,283 - +0.6 5,476,283 - -0.4 5,476,303 + +0.9 5,476,303 + -0.1 5,476,303 + -0.3 5,476,303 + +0.3 5,476,304 - +0.2 5,476,304 - -1.0 5,476,304 - +0.8 5,476,304 - -0.0 5,476,304 - -2.0 5,476,304 - +0.9 5,476,304 - -1.0 5,476,308 - -0.2
Or see this region's nucleotide sequence