Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4669 and PfGW456L13_4670 are separated by 118 nucleotides PfGW456L13_4670 and PfGW456L13_4671 are separated by 173 nucleotides PfGW456L13_4671 and PfGW456L13_4672 are separated by 209 nucleotides
PfGW456L13_4669 - C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS, at 5,207,821 to 5,208,321
_4669
PfGW456L13_4670 - Holin, at 5,208,440 to 5,208,781
_4670
PfGW456L13_4671 - Transcriptional regulator, Cro/CI family, at 5,208,955 to 5,209,689
_4671
PfGW456L13_4672 - DNA mismatch repair protein MutS, at 5,209,899 to 5,212,478
_4672
Position (kb) 5208
5209
5210 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5208.038 kb on + strand, within PfGW456L13_4669 at 5208.038 kb on + strand, within PfGW456L13_4669 at 5208.038 kb on + strand at 5208.039 kb on - strand, within PfGW456L13_4669 at 5208.039 kb on - strand, within PfGW456L13_4669 at 5208.039 kb on - strand, within PfGW456L13_4669 at 5208.045 kb on + strand, within PfGW456L13_4669 at 5208.046 kb on - strand, within PfGW456L13_4669 at 5208.161 kb on + strand, within PfGW456L13_4669 at 5208.161 kb on + strand, within PfGW456L13_4669 at 5208.161 kb on + strand, within PfGW456L13_4669 at 5208.162 kb on - strand, within PfGW456L13_4669 at 5208.171 kb on - strand, within PfGW456L13_4669 at 5208.171 kb on - strand, within PfGW456L13_4669 at 5208.171 kb on - strand, within PfGW456L13_4669 at 5208.171 kb on - strand, within PfGW456L13_4669 at 5208.357 kb on + strand at 5208.357 kb on + strand at 5208.357 kb on + strand at 5208.357 kb on + strand at 5208.357 kb on + strand at 5208.357 kb on + strand at 5208.358 kb on - strand at 5208.402 kb on + strand at 5208.402 kb on + strand at 5208.402 kb on + strand at 5208.402 kb on + strand at 5208.466 kb on + strand at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.504 kb on + strand, within PfGW456L13_4670 at 5208.505 kb on - strand, within PfGW456L13_4670 at 5208.505 kb on - strand, within PfGW456L13_4670 at 5208.505 kb on - strand, within PfGW456L13_4670 at 5208.765 kb on + strand at 5208.798 kb on + strand at 5208.798 kb on + strand at 5208.799 kb on - strand at 5208.822 kb on + strand at 5208.823 kb on - strand at 5208.823 kb on - strand at 5208.881 kb on - strand at 5208.887 kb on - strand at 5208.965 kb on + strand at 5208.965 kb on + strand at 5208.965 kb on + strand at 5208.965 kb on + strand at 5208.965 kb on + strand at 5208.966 kb on - strand at 5208.966 kb on - strand at 5208.966 kb on - strand at 5208.966 kb on - strand at 5208.966 kb on - strand at 5208.966 kb on - strand at 5208.969 kb on + strand at 5208.969 kb on + strand at 5208.970 kb on - strand at 5208.970 kb on - strand at 5208.970 kb on - strand at 5208.970 kb on - strand at 5208.970 kb on - strand at 5208.970 kb on - strand at 5208.997 kb on + strand at 5209.031 kb on + strand, within PfGW456L13_4671 at 5209.031 kb on + strand, within PfGW456L13_4671 at 5209.031 kb on + strand, within PfGW456L13_4671 at 5209.032 kb on - strand, within PfGW456L13_4671 at 5209.032 kb on - strand, within PfGW456L13_4671 at 5209.032 kb on - strand, within PfGW456L13_4671 at 5209.032 kb on - strand, within PfGW456L13_4671 at 5209.032 kb on - strand, within PfGW456L13_4671 at 5209.032 kb on - strand, within PfGW456L13_4671 at 5209.136 kb on + strand, within PfGW456L13_4671 at 5209.208 kb on - strand, within PfGW456L13_4671 at 5209.208 kb on - strand, within PfGW456L13_4671 at 5209.306 kb on - strand, within PfGW456L13_4671 at 5209.306 kb on - strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.423 kb on + strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.424 kb on - strand, within PfGW456L13_4671 at 5209.425 kb on + strand, within PfGW456L13_4671 at 5209.425 kb on + strand, within PfGW456L13_4671 at 5209.425 kb on + strand, within PfGW456L13_4671 at 5209.426 kb on - strand, within PfGW456L13_4671 at 5209.426 kb on - strand, within PfGW456L13_4671 at 5209.426 kb on - strand, within PfGW456L13_4671 at 5209.426 kb on - strand, within PfGW456L13_4671 at 5209.520 kb on + strand, within PfGW456L13_4671 at 5209.660 kb on + strand at 5209.661 kb on - strand at 5209.663 kb on + strand at 5209.663 kb on + strand at 5209.663 kb on + strand at 5209.663 kb on + strand at 5209.663 kb on + strand at 5209.664 kb on - strand at 5209.664 kb on - strand at 5209.664 kb on - strand at 5209.664 kb on - strand at 5209.668 kb on + strand at 5209.668 kb on + strand at 5209.669 kb on - strand at 5209.672 kb on + strand at 5209.672 kb on + strand at 5209.672 kb on + strand at 5209.672 kb on + strand at 5209.673 kb on - strand at 5209.673 kb on - strand at 5209.690 kb on - strand at 5209.749 kb on + strand at 5209.749 kb on + strand at 5209.750 kb on - strand at 5209.768 kb on + strand at 5209.768 kb on + strand at 5209.818 kb on + strand at 5209.904 kb on + strand at 5209.905 kb on - strand at 5210.010 kb on + strand at 5210.011 kb on - strand at 5210.011 kb on - strand at 5210.022 kb on + strand at 5210.022 kb on + strand at 5210.022 kb on + strand at 5210.022 kb on + strand at 5210.023 kb on - strand at 5210.023 kb on - strand at 5210.118 kb on + strand at 5210.118 kb on + strand at 5210.137 kb on - strand at 5210.234 kb on - strand, within PfGW456L13_4672 at 5210.434 kb on + strand, within PfGW456L13_4672 at 5210.434 kb on + strand, within PfGW456L13_4672 at 5210.434 kb on + strand, within PfGW456L13_4672 at 5210.434 kb on + strand, within PfGW456L13_4672 at 5210.434 kb on + strand, within PfGW456L13_4672 at 5210.434 kb on + strand, within PfGW456L13_4672 at 5210.435 kb on - strand, within PfGW456L13_4672 at 5210.435 kb on - strand, within PfGW456L13_4672 at 5210.435 kb on - strand, within PfGW456L13_4672
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 5,208,038 + PfGW456L13_4669 0.43 -1.1 5,208,038 + PfGW456L13_4669 0.43 -0.9 5,208,038 + -0.3 5,208,039 - PfGW456L13_4669 0.44 -0.1 5,208,039 - PfGW456L13_4669 0.44 -0.4 5,208,039 - PfGW456L13_4669 0.44 -0.5 5,208,045 + PfGW456L13_4669 0.45 +0.3 5,208,046 - PfGW456L13_4669 0.45 -0.5 5,208,161 + PfGW456L13_4669 0.68 +0.8 5,208,161 + PfGW456L13_4669 0.68 -1.1 5,208,161 + PfGW456L13_4669 0.68 -0.3 5,208,162 - PfGW456L13_4669 0.68 -1.6 5,208,171 - PfGW456L13_4669 0.70 +0.3 5,208,171 - PfGW456L13_4669 0.70 +0.4 5,208,171 - PfGW456L13_4669 0.70 -1.3 5,208,171 - PfGW456L13_4669 0.70 +1.3 5,208,357 + +1.0 5,208,357 + +0.5 5,208,357 + -0.1 5,208,357 + +0.4 5,208,357 + +0.6 5,208,357 + +0.1 5,208,358 - +0.5 5,208,402 + +0.9 5,208,402 + -0.3 5,208,402 + -0.9 5,208,402 + -0.3 5,208,466 + +0.9 5,208,504 + PfGW456L13_4670 0.19 +0.4 5,208,504 + +2.1 5,208,504 + PfGW456L13_4670 0.19 +0.1 5,208,504 + PfGW456L13_4670 0.19 -0.5 5,208,504 + PfGW456L13_4670 0.19 +0.5 5,208,504 + PfGW456L13_4670 0.19 -0.1 5,208,504 + PfGW456L13_4670 0.19 +0.2 5,208,504 + PfGW456L13_4670 0.19 +0.7 5,208,504 + PfGW456L13_4670 0.19 +0.5 5,208,505 - PfGW456L13_4670 0.19 +0.2 5,208,505 - PfGW456L13_4670 0.19 -0.9 5,208,505 - PfGW456L13_4670 0.19 -0.3 5,208,765 + -0.4 5,208,798 + -0.1 5,208,798 + -1.1 5,208,799 - +0.2 5,208,822 + -0.7 5,208,823 - -2.5 5,208,823 - -2.3 5,208,881 - -0.9 5,208,887 - -1.7 5,208,965 + -1.4 5,208,965 + -0.4 5,208,965 + -0.7 5,208,965 + -0.3 5,208,965 + -0.9 5,208,966 - -1.3 5,208,966 - -4.9 5,208,966 - -3.0 5,208,966 - -3.5 5,208,966 - -3.5 5,208,966 - -3.4 5,208,969 + -1.3 5,208,969 + -0.2 5,208,970 - -2.7 5,208,970 - -1.7 5,208,970 - -2.3 5,208,970 - -1.8 5,208,970 - -2.6 5,208,970 - -2.8 5,208,997 + -0.5 5,209,031 + PfGW456L13_4671 0.10 -0.5 5,209,031 + PfGW456L13_4671 0.10 +0.3 5,209,031 + PfGW456L13_4671 0.10 -2.1 5,209,032 - PfGW456L13_4671 0.10 -2.8 5,209,032 - PfGW456L13_4671 0.10 -1.6 5,209,032 - PfGW456L13_4671 0.10 -4.3 5,209,032 - PfGW456L13_4671 0.10 -2.3 5,209,032 - PfGW456L13_4671 0.10 -4.0 5,209,032 - PfGW456L13_4671 0.10 -4.3 5,209,136 + PfGW456L13_4671 0.25 -1.2 5,209,208 - PfGW456L13_4671 0.34 -4.0 5,209,208 - PfGW456L13_4671 0.34 -2.0 5,209,306 - PfGW456L13_4671 0.48 -4.2 5,209,306 - PfGW456L13_4671 0.48 -3.0 5,209,423 + PfGW456L13_4671 0.64 -3.6 5,209,423 + PfGW456L13_4671 0.64 -2.6 5,209,423 + PfGW456L13_4671 0.64 -2.5 5,209,423 + PfGW456L13_4671 0.64 -3.1 5,209,423 + PfGW456L13_4671 0.64 -3.2 5,209,423 + PfGW456L13_4671 0.64 -4.2 5,209,423 + PfGW456L13_4671 0.64 -2.5 5,209,423 + PfGW456L13_4671 0.64 -2.0 5,209,423 + PfGW456L13_4671 0.64 -3.2 5,209,423 + PfGW456L13_4671 0.64 -2.0 5,209,423 + PfGW456L13_4671 0.64 -2.1 5,209,423 + PfGW456L13_4671 0.64 -2.4 5,209,423 + PfGW456L13_4671 0.64 -2.4 5,209,423 + PfGW456L13_4671 0.64 -2.6 5,209,423 + PfGW456L13_4671 0.64 -3.3 5,209,423 + PfGW456L13_4671 0.64 -1.4 5,209,423 + PfGW456L13_4671 0.64 -1.7 5,209,423 + PfGW456L13_4671 0.64 -3.8 5,209,423 + PfGW456L13_4671 0.64 -2.5 5,209,423 + PfGW456L13_4671 0.64 -4.0 5,209,423 + PfGW456L13_4671 0.64 -3.4 5,209,423 + PfGW456L13_4671 0.64 -2.4 5,209,423 + PfGW456L13_4671 0.64 -2.5 5,209,423 + PfGW456L13_4671 0.64 -3.9 5,209,424 - PfGW456L13_4671 0.64 -2.8 5,209,424 - PfGW456L13_4671 0.64 -2.8 5,209,424 - PfGW456L13_4671 0.64 -2.5 5,209,424 - PfGW456L13_4671 0.64 -2.2 5,209,424 - PfGW456L13_4671 0.64 -2.7 5,209,424 - PfGW456L13_4671 0.64 -2.4 5,209,424 - PfGW456L13_4671 0.64 -4.0 5,209,424 - PfGW456L13_4671 0.64 -2.1 5,209,424 - PfGW456L13_4671 0.64 -3.6 5,209,424 - PfGW456L13_4671 0.64 -1.7 5,209,424 - PfGW456L13_4671 0.64 -5.4 5,209,424 - PfGW456L13_4671 0.64 -4.5 5,209,424 - PfGW456L13_4671 0.64 -4.8 5,209,424 - PfGW456L13_4671 0.64 -0.1 5,209,424 - PfGW456L13_4671 0.64 -2.5 5,209,424 - PfGW456L13_4671 0.64 -5.1 5,209,424 - PfGW456L13_4671 0.64 -3.1 5,209,424 - PfGW456L13_4671 0.64 -3.4 5,209,424 - PfGW456L13_4671 0.64 -0.7 5,209,424 - PfGW456L13_4671 0.64 -3.1 5,209,424 - PfGW456L13_4671 0.64 -1.7 5,209,424 - PfGW456L13_4671 0.64 -3.9 5,209,424 - PfGW456L13_4671 0.64 -2.7 5,209,424 - PfGW456L13_4671 0.64 -3.9 5,209,424 - PfGW456L13_4671 0.64 -4.0 5,209,425 + PfGW456L13_4671 0.64 -2.8 5,209,425 + PfGW456L13_4671 0.64 -4.1 5,209,425 + PfGW456L13_4671 0.64 -1.3 5,209,426 - PfGW456L13_4671 0.64 -1.3 5,209,426 - PfGW456L13_4671 0.64 -3.0 5,209,426 - PfGW456L13_4671 0.64 -2.0 5,209,426 - PfGW456L13_4671 0.64 -4.0 5,209,520 + PfGW456L13_4671 0.77 -2.0 5,209,660 + -4.3 5,209,661 - -3.8 5,209,663 + -4.0 5,209,663 + -2.8 5,209,663 + -3.4 5,209,663 + -3.6 5,209,663 + -1.5 5,209,664 - -3.4 5,209,664 - -3.1 5,209,664 - -2.0 5,209,664 - -1.8 5,209,668 + -1.7 5,209,668 + -2.8 5,209,669 - -1.0 5,209,672 + -2.6 5,209,672 + -2.4 5,209,672 + -4.1 5,209,672 + -4.6 5,209,673 - -0.7 5,209,673 - -3.7 5,209,690 - +0.1 5,209,749 + +1.3 5,209,749 + -0.5 5,209,750 - -0.0 5,209,768 + +0.7 5,209,768 + -0.3 5,209,818 + -0.3 5,209,904 + +0.1 5,209,905 - +0.2 5,210,010 + +0.6 5,210,011 - +0.6 5,210,011 - -0.2 5,210,022 + +0.1 5,210,022 + +0.4 5,210,022 + +0.2 5,210,022 + -0.1 5,210,023 - +0.7 5,210,023 - +1.9 5,210,118 + -0.4 5,210,118 + +0.5 5,210,137 - +0.6 5,210,234 - PfGW456L13_4672 0.13 +0.6 5,210,434 + PfGW456L13_4672 0.21 +0.1 5,210,434 + PfGW456L13_4672 0.21 -1.1 5,210,434 + PfGW456L13_4672 0.21 +1.2 5,210,434 + PfGW456L13_4672 0.21 +0.3 5,210,434 + PfGW456L13_4672 0.21 -1.8 5,210,434 + PfGW456L13_4672 0.21 +0.1 5,210,435 - PfGW456L13_4672 0.21 +0.8 5,210,435 - PfGW456L13_4672 0.21 -0.3 5,210,435 - PfGW456L13_4672 0.21 +0.2
Or see this region's nucleotide sequence