Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4231

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4229 and PfGW456L13_4230 are separated by 180 nucleotidesPfGW456L13_4230 and PfGW456L13_4231 are separated by 55 nucleotidesPfGW456L13_4231 and PfGW456L13_4232 overlap by 4 nucleotides PfGW456L13_4229 - Long-chain fatty acid transport protein, at 4,744,604 to 4,745,884 _4229 PfGW456L13_4230 - Glutathione peroxidase family protein, at 4,746,065 to 4,746,631 _4230 PfGW456L13_4231 - hypothetical protein, at 4,746,687 to 4,746,809 _4231 PfGW456L13_4232 - Permeases of the major facilitator superfamily, at 4,746,806 to 4,748,014 _4232 Position (kb) 4746 4747Strain fitness (log2 ratio) -2 -1 0 1 2at 4745.765 kb on + strandat 4745.766 kb on - strandat 4745.766 kb on - strandat 4745.766 kb on - strandat 4745.772 kb on - strandat 4745.822 kb on + strandat 4745.822 kb on + strandat 4745.822 kb on + strandat 4745.822 kb on + strandat 4745.823 kb on - strandat 4745.823 kb on - strandat 4745.823 kb on - strandat 4745.823 kb on - strandat 4745.823 kb on - strandat 4745.823 kb on - strandat 4745.834 kb on + strandat 4745.834 kb on + strandat 4745.834 kb on + strandat 4745.835 kb on - strandat 4745.835 kb on - strandat 4745.835 kb on - strandat 4745.844 kb on - strandat 4745.844 kb on - strandat 4745.863 kb on - strandat 4745.873 kb on + strandat 4745.966 kb on + strandat 4745.966 kb on + strandat 4746.007 kb on + strandat 4746.008 kb on - strandat 4746.020 kb on + strandat 4746.059 kb on + strandat 4746.060 kb on - strandat 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.189 kb on + strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strandat 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.190 kb on - strand, within PfGW456L13_4230at 4746.195 kb on + strand, within PfGW456L13_4230at 4746.195 kb on + strand, within PfGW456L13_4230at 4746.195 kb on + strand, within PfGW456L13_4230at 4746.195 kb on + strand, within PfGW456L13_4230at 4746.196 kb on - strand, within PfGW456L13_4230at 4746.196 kb on - strand, within PfGW456L13_4230at 4746.303 kb on + strand, within PfGW456L13_4230at 4746.303 kb on + strand, within PfGW456L13_4230at 4746.303 kb on + strand, within PfGW456L13_4230at 4746.303 kb on + strand, within PfGW456L13_4230at 4746.303 kb on + strand, within PfGW456L13_4230at 4746.303 kb on + strand, within PfGW456L13_4230at 4746.304 kb on - strand, within PfGW456L13_4230at 4746.304 kb on - strand, within PfGW456L13_4230at 4746.304 kb on - strand, within PfGW456L13_4230at 4746.304 kb on - strand, within PfGW456L13_4230at 4746.304 kb on - strand, within PfGW456L13_4230at 4746.304 kb on - strand, within PfGW456L13_4230at 4746.312 kb on + strand, within PfGW456L13_4230at 4746.312 kb on + strand, within PfGW456L13_4230at 4746.313 kb on - strand, within PfGW456L13_4230at 4746.313 kb on - strand, within PfGW456L13_4230at 4746.380 kb on + strand, within PfGW456L13_4230at 4746.380 kb on + strand, within PfGW456L13_4230at 4746.380 kb on + strand, within PfGW456L13_4230at 4746.381 kb on - strand, within PfGW456L13_4230at 4746.668 kb on + strandat 4746.762 kb on + strand, within PfGW456L13_4231at 4746.781 kb on - strand, within PfGW456L13_4231at 4746.810 kb on - strandat 4746.810 kb on - strandat 4746.919 kb on - strandat 4746.919 kb on - strandat 4746.919 kb on - strandat 4746.936 kb on + strand, within PfGW456L13_4232at 4746.936 kb on + strand, within PfGW456L13_4232at 4746.936 kb on + strand, within PfGW456L13_4232at 4746.936 kb on + strand, within PfGW456L13_4232at 4746.936 kb on + strand, within PfGW456L13_4232at 4746.937 kb on - strand, within PfGW456L13_4232at 4746.937 kb on - strand, within PfGW456L13_4232at 4747.104 kb on + strand, within PfGW456L13_4232at 4747.104 kb on + strand, within PfGW456L13_4232at 4747.104 kb on + strand, within PfGW456L13_4232at 4747.104 kb on + strand, within PfGW456L13_4232at 4747.105 kb on - strand, within PfGW456L13_4232at 4747.105 kb on - strand, within PfGW456L13_4232at 4747.105 kb on - strand, within PfGW456L13_4232at 4747.167 kb on + strand, within PfGW456L13_4232at 4747.167 kb on + strand, within PfGW456L13_4232at 4747.167 kb on + strand, within PfGW456L13_4232at 4747.167 kb on + strand, within PfGW456L13_4232at 4747.168 kb on - strand, within PfGW456L13_4232at 4747.168 kb on - strand, within PfGW456L13_4232at 4747.168 kb on - strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.224 kb on + strand, within PfGW456L13_4232at 4747.225 kb on - strand, within PfGW456L13_4232at 4747.225 kb on - strand, within PfGW456L13_4232at 4747.225 kb on - strand, within PfGW456L13_4232at 4747.225 kb on - strand, within PfGW456L13_4232at 4747.306 kb on - strand, within PfGW456L13_4232at 4747.669 kb on + strand, within PfGW456L13_4232at 4747.670 kb on - strand, within PfGW456L13_4232

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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4,745,765 + -0.2
4,745,766 - +0.1
4,745,766 - -0.1
4,745,766 - +1.0
4,745,772 - -0.1
4,745,822 + -0.7
4,745,822 + -0.2
4,745,822 + -2.3
4,745,822 + -0.2
4,745,823 - +0.6
4,745,823 - +0.3
4,745,823 - -0.7
4,745,823 - +0.3
4,745,823 - -1.1
4,745,823 - +0.0
4,745,834 + +1.0
4,745,834 + +0.4
4,745,834 + +0.4
4,745,835 - +0.1
4,745,835 - +1.1
4,745,835 - +0.9
4,745,844 - -0.5
4,745,844 - +0.4
4,745,863 - +0.7
4,745,873 + -0.1
4,745,966 + -0.1
4,745,966 + -0.6
4,746,007 + -1.2
4,746,008 - +0.1
4,746,020 + +0.4
4,746,059 + -0.1
4,746,060 - -0.2
4,746,189 + PfGW456L13_4230 0.22 -0.1
4,746,189 + PfGW456L13_4230 0.22 +1.1
4,746,189 + PfGW456L13_4230 0.22 +0.3
4,746,189 + PfGW456L13_4230 0.22 +1.4
4,746,189 + PfGW456L13_4230 0.22 -0.8
4,746,189 + PfGW456L13_4230 0.22 -0.5
4,746,189 + PfGW456L13_4230 0.22 +1.3
4,746,189 + PfGW456L13_4230 0.22 +0.5
4,746,189 + PfGW456L13_4230 0.22 -0.1
4,746,189 + PfGW456L13_4230 0.22 +0.5
4,746,189 + PfGW456L13_4230 0.22 +0.0
4,746,189 + PfGW456L13_4230 0.22 +0.5
4,746,189 + PfGW456L13_4230 0.22 -0.7
4,746,189 + PfGW456L13_4230 0.22 +0.6
4,746,189 + PfGW456L13_4230 0.22 -0.5
4,746,189 + PfGW456L13_4230 0.22 -0.2
4,746,189 + PfGW456L13_4230 0.22 -0.6
4,746,189 + PfGW456L13_4230 0.22 +0.4
4,746,190 - PfGW456L13_4230 0.22 -0.1
4,746,190 - PfGW456L13_4230 0.22 -0.5
4,746,190 - PfGW456L13_4230 0.22 -0.3
4,746,190 - PfGW456L13_4230 0.22 -0.5
4,746,190 - PfGW456L13_4230 0.22 -0.5
4,746,190 - +2.1
4,746,190 - PfGW456L13_4230 0.22 +0.7
4,746,190 - PfGW456L13_4230 0.22 -1.1
4,746,190 - PfGW456L13_4230 0.22 -0.5
4,746,190 - PfGW456L13_4230 0.22 +0.0
4,746,190 - PfGW456L13_4230 0.22 -0.4
4,746,190 - PfGW456L13_4230 0.22 -0.8
4,746,190 - PfGW456L13_4230 0.22 -0.8
4,746,190 - PfGW456L13_4230 0.22 +0.4
4,746,190 - PfGW456L13_4230 0.22 -0.2
4,746,190 - PfGW456L13_4230 0.22 -0.8
4,746,190 - PfGW456L13_4230 0.22 -0.3
4,746,190 - PfGW456L13_4230 0.22 +0.1
4,746,195 + PfGW456L13_4230 0.23 -0.6
4,746,195 + PfGW456L13_4230 0.23 -0.3
4,746,195 + PfGW456L13_4230 0.23 +0.4
4,746,195 + PfGW456L13_4230 0.23 +0.3
4,746,196 - PfGW456L13_4230 0.23 -0.3
4,746,196 - PfGW456L13_4230 0.23 +0.9
4,746,303 + PfGW456L13_4230 0.42 +0.1
4,746,303 + PfGW456L13_4230 0.42 -0.9
4,746,303 + PfGW456L13_4230 0.42 +0.6
4,746,303 + PfGW456L13_4230 0.42 +0.3
4,746,303 + PfGW456L13_4230 0.42 -0.5
4,746,303 + PfGW456L13_4230 0.42 -0.4
4,746,304 - PfGW456L13_4230 0.42 +0.4
4,746,304 - PfGW456L13_4230 0.42 -0.0
4,746,304 - PfGW456L13_4230 0.42 -2.7
4,746,304 - PfGW456L13_4230 0.42 +0.0
4,746,304 - PfGW456L13_4230 0.42 -0.2
4,746,304 - PfGW456L13_4230 0.42 +0.2
4,746,312 + PfGW456L13_4230 0.44 +2.1
4,746,312 + PfGW456L13_4230 0.44 -0.9
4,746,313 - PfGW456L13_4230 0.44 -1.2
4,746,313 - PfGW456L13_4230 0.44 -0.3
4,746,380 + PfGW456L13_4230 0.56 +0.8
4,746,380 + PfGW456L13_4230 0.56 +0.9
4,746,380 + PfGW456L13_4230 0.56 -0.3
4,746,381 - PfGW456L13_4230 0.56 +1.2
4,746,668 + -0.4
4,746,762 + PfGW456L13_4231 0.61 -1.1
4,746,781 - PfGW456L13_4231 0.76 -1.1
4,746,810 - -0.4
4,746,810 - -0.4
4,746,919 - +0.1
4,746,919 - +0.3
4,746,919 - +0.3
4,746,936 + PfGW456L13_4232 0.11 -0.3
4,746,936 + PfGW456L13_4232 0.11 -0.2
4,746,936 + PfGW456L13_4232 0.11 -0.3
4,746,936 + PfGW456L13_4232 0.11 -0.9
4,746,936 + PfGW456L13_4232 0.11 -0.3
4,746,937 - PfGW456L13_4232 0.11 +0.1
4,746,937 - PfGW456L13_4232 0.11 +0.8
4,747,104 + PfGW456L13_4232 0.25 -1.9
4,747,104 + PfGW456L13_4232 0.25 -1.6
4,747,104 + PfGW456L13_4232 0.25 +0.0
4,747,104 + PfGW456L13_4232 0.25 -0.5
4,747,105 - PfGW456L13_4232 0.25 +0.5
4,747,105 - PfGW456L13_4232 0.25 -1.9
4,747,105 - PfGW456L13_4232 0.25 -0.3
4,747,167 + PfGW456L13_4232 0.30 -0.8
4,747,167 + PfGW456L13_4232 0.30 -0.3
4,747,167 + PfGW456L13_4232 0.30 -0.3
4,747,167 + PfGW456L13_4232 0.30 +0.4
4,747,168 - PfGW456L13_4232 0.30 -0.7
4,747,168 - PfGW456L13_4232 0.30 -0.1
4,747,168 - PfGW456L13_4232 0.30 -0.0
4,747,224 + PfGW456L13_4232 0.35 -1.7
4,747,224 + PfGW456L13_4232 0.35 +0.2
4,747,224 + PfGW456L13_4232 0.35 -1.7
4,747,224 + PfGW456L13_4232 0.35 -1.7
4,747,224 + PfGW456L13_4232 0.35 +1.0
4,747,224 + PfGW456L13_4232 0.35 +0.4
4,747,224 + PfGW456L13_4232 0.35 +0.1
4,747,224 + PfGW456L13_4232 0.35 -0.5
4,747,224 + PfGW456L13_4232 0.35 +0.4
4,747,224 + PfGW456L13_4232 0.35 +1.4
4,747,224 + PfGW456L13_4232 0.35 -0.3
4,747,224 + PfGW456L13_4232 0.35 -0.9
4,747,224 + PfGW456L13_4232 0.35 +0.9
4,747,225 - PfGW456L13_4232 0.35 +0.3
4,747,225 - PfGW456L13_4232 0.35 +0.0
4,747,225 - PfGW456L13_4232 0.35 +0.3
4,747,225 - PfGW456L13_4232 0.35 -0.6
4,747,306 - PfGW456L13_4232 0.41 +0.1
4,747,669 + PfGW456L13_4232 0.71 -1.3
4,747,670 - PfGW456L13_4232 0.71 -1.2

Or see this region's nucleotide sequence