Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3302

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3300 and PfGW456L13_3301 are separated by 5 nucleotidesPfGW456L13_3301 and PfGW456L13_3302 overlap by 4 nucleotidesPfGW456L13_3302 and PfGW456L13_3303 overlap by 8 nucleotides PfGW456L13_3300 - MoxR-like ATPase in aerotolerance operon, at 3,709,035 to 3,709,994 _3300 PfGW456L13_3301 - hypothetical protein PA3071, at 3,710,000 to 3,710,944 _3301 PfGW456L13_3302 - FIG00954674: hypothetical protein, at 3,710,941 to 3,711,435 _3302 PfGW456L13_3303 - BatA (Bacteroides aerotolerance operon), at 3,711,428 to 3,712,510 _3303 Position (kb) 3710 3711 3712Strain fitness (log2 ratio) -2 -1 0 1at 3709.982 kb on - strandat 3710.181 kb on - strand, within PfGW456L13_3301at 3710.181 kb on - strand, within PfGW456L13_3301at 3710.417 kb on + strand, within PfGW456L13_3301at 3710.417 kb on + strand, within PfGW456L13_3301at 3710.418 kb on - strand, within PfGW456L13_3301at 3710.418 kb on - strand, within PfGW456L13_3301at 3710.418 kb on - strand, within PfGW456L13_3301at 3710.435 kb on + strand, within PfGW456L13_3301at 3710.435 kb on + strandat 3710.436 kb on - strand, within PfGW456L13_3301at 3710.436 kb on - strand, within PfGW456L13_3301at 3710.730 kb on + strand, within PfGW456L13_3301at 3710.730 kb on + strand, within PfGW456L13_3301at 3710.730 kb on + strand, within PfGW456L13_3301at 3710.730 kb on + strand, within PfGW456L13_3301at 3710.731 kb on - strand, within PfGW456L13_3301at 3710.731 kb on - strand, within PfGW456L13_3301at 3710.909 kb on + strandat 3710.973 kb on - strandat 3711.075 kb on + strandat 3711.352 kb on + strand, within PfGW456L13_3302at 3711.352 kb on + strand, within PfGW456L13_3302at 3711.492 kb on + strandat 3711.492 kb on + strandat 3711.492 kb on + strandat 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.864 kb on - strand, within PfGW456L13_3303at 3711.864 kb on - strand, within PfGW456L13_3303at 3712.229 kb on + strand, within PfGW456L13_3303at 3712.229 kb on + strand, within PfGW456L13_3303at 3712.230 kb on - strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,709,982 - -2.0
3,710,181 - PfGW456L13_3301 0.19 -0.3
3,710,181 - PfGW456L13_3301 0.19 -1.3
3,710,417 + PfGW456L13_3301 0.44 +1.1
3,710,417 + PfGW456L13_3301 0.44 -0.7
3,710,418 - PfGW456L13_3301 0.44 -1.5
3,710,418 - PfGW456L13_3301 0.44 +0.2
3,710,418 - PfGW456L13_3301 0.44 +0.2
3,710,435 + PfGW456L13_3301 0.46 -0.7
3,710,435 + -0.0
3,710,436 - PfGW456L13_3301 0.46 -0.6
3,710,436 - PfGW456L13_3301 0.46 +0.7
3,710,730 + PfGW456L13_3301 0.77 -0.8
3,710,730 + PfGW456L13_3301 0.77 -0.7
3,710,730 + PfGW456L13_3301 0.77 +0.1
3,710,730 + PfGW456L13_3301 0.77 -0.5
3,710,731 - PfGW456L13_3301 0.77 -0.4
3,710,731 - PfGW456L13_3301 0.77 -0.8
3,710,909 + +0.9
3,710,973 - -0.1
3,711,075 + +0.3
3,711,352 + PfGW456L13_3302 0.83 -1.2
3,711,352 + PfGW456L13_3302 0.83 +0.3
3,711,492 + -0.2
3,711,492 + +0.5
3,711,492 + +0.8
3,711,615 + PfGW456L13_3303 0.17 +1.5
3,711,615 + PfGW456L13_3303 0.17 +0.0
3,711,615 + PfGW456L13_3303 0.17 +0.4
3,711,615 + PfGW456L13_3303 0.17 +0.1
3,711,615 + PfGW456L13_3303 0.17 +0.0
3,711,864 - PfGW456L13_3303 0.40 -1.3
3,711,864 - PfGW456L13_3303 0.40 +0.3
3,712,229 + PfGW456L13_3303 0.74 +0.3
3,712,229 + PfGW456L13_3303 0.74 +0.2
3,712,230 - PfGW456L13_3303 0.74 +1.1
3,712,337 + PfGW456L13_3303 0.84 -0.3
3,712,337 + PfGW456L13_3303 0.84 +0.0
3,712,337 + PfGW456L13_3303 0.84 -0.5
3,712,337 + PfGW456L13_3303 0.84 -0.5
3,712,337 + PfGW456L13_3303 0.84 +0.1
3,712,338 - PfGW456L13_3303 0.84 -1.6
3,712,338 - PfGW456L13_3303 0.84 -1.9
3,712,338 - PfGW456L13_3303 0.84 +1.1
3,712,338 - PfGW456L13_3303 0.84 -1.1
3,712,338 - PfGW456L13_3303 0.84 -1.4
3,712,338 - PfGW456L13_3303 0.84 -0.9

Or see this region's nucleotide sequence