Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_111

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_110 and PfGW456L13_111 are separated by 285 nucleotidesPfGW456L13_111 and PfGW456L13_112 overlap by 4 nucleotidesPfGW456L13_112 and PfGW456L13_113 are separated by 23 nucleotides PfGW456L13_110 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 128,497 to 129,129 _110 PfGW456L13_111 - Urease accessory protein UreE, at 129,415 to 129,915 _111 PfGW456L13_112 - Urease accessory protein UreF, at 129,912 to 130,586 _112 PfGW456L13_113 - Urease accessory protein UreG, at 130,610 to 131,224 _113 Position (kb) 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 128.458 kb on + strandat 128.458 kb on + strandat 128.459 kb on - strandat 128.459 kb on - strandat 128.627 kb on + strand, within PfGW456L13_110at 128.628 kb on - strand, within PfGW456L13_110at 128.679 kb on - strand, within PfGW456L13_110at 128.726 kb on + strand, within PfGW456L13_110at 128.726 kb on + strand, within PfGW456L13_110at 128.727 kb on - strand, within PfGW456L13_110at 128.745 kb on - strand, within PfGW456L13_110at 129.081 kb on + strandat 129.081 kb on + strandat 129.081 kb on + strandat 129.081 kb on + strandat 129.082 kb on - strandat 129.082 kb on - strandat 129.127 kb on + strandat 129.128 kb on - strandat 129.255 kb on + strandat 129.256 kb on - strandat 129.256 kb on - strandat 129.256 kb on - strandat 129.301 kb on + strandat 129.302 kb on - strandat 129.325 kb on + strandat 129.325 kb on + strandat 129.325 kb on + strandat 129.347 kb on + strandat 129.348 kb on - strandat 129.380 kb on + strandat 129.682 kb on + strand, within PfGW456L13_111at 129.682 kb on + strand, within PfGW456L13_111at 129.748 kb on + strand, within PfGW456L13_111at 129.748 kb on + strand, within PfGW456L13_111at 129.749 kb on - strand, within PfGW456L13_111at 129.877 kb on + strandat 129.877 kb on + strandat 129.877 kb on + strandat 129.878 kb on - strandat 129.878 kb on - strandat 129.878 kb on - strandat 129.975 kb on + strandat 129.975 kb on + strandat 129.975 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.545 kb on - strandat 130.563 kb on + strandat 130.595 kb on - strandat 130.595 kb on - strandat 130.595 kb on - strandat 130.706 kb on + strand, within PfGW456L13_113at 130.707 kb on - strand, within PfGW456L13_113at 130.707 kb on - strand, within PfGW456L13_113at 130.707 kb on - strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strandat 130.736 kb on + strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.911 kb on + strand, within PfGW456L13_113at 130.911 kb on + strand, within PfGW456L13_113at 130.912 kb on - strand, within PfGW456L13_113

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
128,458 + -0.7
128,458 + +0.2
128,459 - -0.1
128,459 - +0.6
128,627 + PfGW456L13_110 0.21 -1.1
128,628 - PfGW456L13_110 0.21 -0.6
128,679 - PfGW456L13_110 0.29 -0.1
128,726 + PfGW456L13_110 0.36 -0.9
128,726 + PfGW456L13_110 0.36 +0.3
128,727 - PfGW456L13_110 0.36 -0.1
128,745 - PfGW456L13_110 0.39 -0.3
129,081 + +0.3
129,081 + +0.2
129,081 + +0.6
129,081 + +0.0
129,082 - +0.4
129,082 - +0.5
129,127 + -0.3
129,128 - +0.3
129,255 + +0.6
129,256 - -1.1
129,256 - -0.2
129,256 - +1.0
129,301 + +1.1
129,302 - +1.1
129,325 + -1.6
129,325 + -1.4
129,325 + -0.2
129,347 + +1.3
129,348 - -0.3
129,380 + +0.3
129,682 + PfGW456L13_111 0.53 +0.8
129,682 + PfGW456L13_111 0.53 -2.9
129,748 + PfGW456L13_111 0.66 -1.5
129,748 + PfGW456L13_111 0.66 -0.7
129,749 - PfGW456L13_111 0.67 -0.4
129,877 + +0.2
129,877 + +0.4
129,877 + +0.3
129,878 - -0.3
129,878 - +0.7
129,878 - +0.6
129,975 + -1.4
129,975 + +0.1
129,975 + +0.5
130,544 + -0.1
130,544 + -0.9
130,544 + -0.6
130,544 + +0.8
130,544 + -0.1
130,545 - -0.5
130,563 + -0.2
130,595 - +0.4
130,595 - -0.7
130,595 - +0.0
130,706 + PfGW456L13_113 0.16 +0.8
130,707 - PfGW456L13_113 0.16 +0.5
130,707 - PfGW456L13_113 0.16 -0.5
130,707 - PfGW456L13_113 0.16 -0.2
130,736 + PfGW456L13_113 0.20 -2.3
130,736 + PfGW456L13_113 0.20 +1.3
130,736 + PfGW456L13_113 0.20 +0.3
130,736 + PfGW456L13_113 0.20 +0.1
130,736 + -0.9
130,736 + PfGW456L13_113 0.20 -0.1
130,737 - PfGW456L13_113 0.21 -0.6
130,737 - PfGW456L13_113 0.21 +0.2
130,737 - PfGW456L13_113 0.21 +0.4
130,737 - PfGW456L13_113 0.21 -0.7
130,737 - PfGW456L13_113 0.21 +2.2
130,737 - PfGW456L13_113 0.21 -0.4
130,737 - PfGW456L13_113 0.21 -0.6
130,737 - PfGW456L13_113 0.21 -0.4
130,737 - PfGW456L13_113 0.21 -0.0
130,737 - PfGW456L13_113 0.21 +1.2
130,911 + PfGW456L13_113 0.49 -0.4
130,911 + PfGW456L13_113 0.49 -1.2
130,912 - PfGW456L13_113 0.49 +0.4

Or see this region's nucleotide sequence