Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4603

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4601 and GFF4602 are separated by 114 nucleotidesGFF4602 and GFF4603 are separated by 46 nucleotidesGFF4603 and GFF4604 overlap by 4 nucleotides GFF4601 - Phosphoglucomutase (EC 5.4.2.2), at 390,302 to 391,942 GFF4601 GFF4602 - 'Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)' transl_table=11, at 392,057 to 392,560 GFF4602 GFF4603 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 392,607 to 393,926 GFF4603 GFF4604 - Ornithine decarboxylase (EC 4.1.1.17), at 393,923 to 396,121 GFF4604 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 391.634 kb on + strand, within GFF4601at 392.137 kb on + strand, within GFF4602at 392.137 kb on + strand, within GFF4602at 392.138 kb on - strand, within GFF4602at 392.138 kb on - strand, within GFF4602at 392.266 kb on - strand, within GFF4602at 392.270 kb on - strand, within GFF4602at 392.270 kb on - strand, within GFF4602at 392.271 kb on + strand, within GFF4602at 392.294 kb on + strand, within GFF4602at 392.295 kb on - strand, within GFF4602at 392.295 kb on - strand, within GFF4602at 392.295 kb on - strand, within GFF4602at 392.298 kb on - strand, within GFF4602at 392.346 kb on - strand, within GFF4602at 392.513 kb on - strandat 392.581 kb on - strandat 392.654 kb on - strandat 392.656 kb on - strandat 392.732 kb on + strandat 392.734 kb on + strandat 392.734 kb on + strandat 392.735 kb on - strandat 392.836 kb on + strand, within GFF4603at 392.843 kb on + strand, within GFF4603at 392.843 kb on + strand, within GFF4603at 392.844 kb on - strand, within GFF4603at 393.215 kb on - strand, within GFF4603at 393.215 kb on - strand, within GFF4603at 393.327 kb on + strand, within GFF4603at 393.393 kb on + strand, within GFF4603at 393.397 kb on + strand, within GFF4603at 393.397 kb on + strand, within GFF4603at 393.397 kb on + strand, within GFF4603at 393.398 kb on - strand, within GFF4603at 393.398 kb on - strand, within GFF4603at 393.398 kb on - strand, within GFF4603at 393.476 kb on + strand, within GFF4603at 393.477 kb on - strand, within GFF4603at 393.494 kb on + strand, within GFF4603at 393.497 kb on - strand, within GFF4603at 393.589 kb on + strand, within GFF4603at 393.656 kb on + strand, within GFF4603at 393.658 kb on + strand, within GFF4603at 393.659 kb on - strand, within GFF4603at 393.738 kb on - strand, within GFF4603at 393.800 kb on + strandat 393.872 kb on + strandat 393.873 kb on - strandat 393.920 kb on + strandat 394.018 kb on - strandat 394.122 kb on - strandat 394.122 kb on - strandat 394.219 kb on - strand, within GFF4604at 394.219 kb on - strand, within GFF4604at 394.224 kb on + strand, within GFF4604at 394.224 kb on + strand, within GFF4604at 394.225 kb on - strand, within GFF4604at 394.225 kb on - strand, within GFF4604at 394.225 kb on - strand, within GFF4604at 394.246 kb on + strand, within GFF4604at 394.315 kb on - strand, within GFF4604at 394.351 kb on + strand, within GFF4604at 394.394 kb on + strand, within GFF4604at 394.466 kb on + strand, within GFF4604at 394.865 kb on - strand, within GFF4604

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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391,634 + GFF4601 0.81 +2.9
392,137 + GFF4602 0.16 -0.2
392,137 + GFF4602 0.16 +0.5
392,138 - GFF4602 0.16 -1.1
392,138 - GFF4602 0.16 -0.1
392,266 - GFF4602 0.41 +0.7
392,270 - GFF4602 0.42 -0.2
392,270 - GFF4602 0.42 -0.3
392,271 + GFF4602 0.42 -0.8
392,294 + GFF4602 0.47 +0.4
392,295 - GFF4602 0.47 +0.1
392,295 - GFF4602 0.47 -0.8
392,295 - GFF4602 0.47 +0.1
392,298 - GFF4602 0.48 -0.3
392,346 - GFF4602 0.57 +0.0
392,513 - +0.1
392,581 - -0.6
392,654 - -0.0
392,656 - -0.1
392,732 + +0.1
392,734 + -0.3
392,734 + -0.0
392,735 - -0.1
392,836 + GFF4603 0.17 -1.1
392,843 + GFF4603 0.18 -2.0
392,843 + GFF4603 0.18 +0.6
392,844 - GFF4603 0.18 -0.3
393,215 - GFF4603 0.46 -0.1
393,215 - GFF4603 0.46 -0.3
393,327 + GFF4603 0.55 -0.4
393,393 + GFF4603 0.60 -0.8
393,397 + GFF4603 0.60 +1.2
393,397 + GFF4603 0.60 -0.3
393,397 + GFF4603 0.60 +0.7
393,398 - GFF4603 0.60 -0.1
393,398 - GFF4603 0.60 +0.1
393,398 - GFF4603 0.60 -0.6
393,476 + GFF4603 0.66 +0.0
393,477 - GFF4603 0.66 -0.2
393,494 + GFF4603 0.67 -0.4
393,497 - GFF4603 0.67 -0.6
393,589 + GFF4603 0.74 -0.3
393,656 + GFF4603 0.79 -0.8
393,658 + GFF4603 0.80 -0.1
393,659 - GFF4603 0.80 -0.5
393,738 - GFF4603 0.86 -0.3
393,800 + -3.1
393,872 + -1.4
393,873 - +0.1
393,920 + -1.0
394,018 - +0.0
394,122 - +0.5
394,122 - -0.2
394,219 - GFF4604 0.13 -0.1
394,219 - GFF4604 0.13 -0.6
394,224 + GFF4604 0.14 +0.0
394,224 + GFF4604 0.14 +0.5
394,225 - GFF4604 0.14 +0.2
394,225 - GFF4604 0.14 -0.2
394,225 - GFF4604 0.14 -0.8
394,246 + GFF4604 0.15 +0.5
394,315 - GFF4604 0.18 -0.5
394,351 + GFF4604 0.19 -1.8
394,394 + GFF4604 0.21 -0.2
394,466 + GFF4604 0.25 +0.4
394,865 - GFF4604 0.43 -0.5

Or see this region's nucleotide sequence