Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4556

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4554 and GFF4555 are separated by 8 nucleotidesGFF4555 and GFF4556 are separated by 14 nucleotidesGFF4556 and GFF4557 are separated by 287 nucleotidesGFF4557 and GFF4558 are separated by 22 nucleotides GFF4554 - DNA polymerase III delta subunit (EC 2.7.7.7), at 337,703 to 338,725 GFF4554 GFF4555 - LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B), at 338,734 to 339,324 GFF4555 GFF4556 - Leucyl-tRNA synthetase (EC 6.1.1.4), at 339,339 to 341,921 GFF4556 GFF4557 - Hydrolase, UxaA family, at 342,209 to 342,499 GFF4557 GFF4558 - Altronate hydrolase (EC 4.2.1.7), at 342,522 to 343,688 GFF4558 Position (kb) 339 340 341 342Strain fitness (log2 ratio) -2 -1 0 1at 342.262 kb on + strand, within GFF4557at 342.263 kb on - strand, within GFF4557at 342.395 kb on - strand, within GFF4557at 342.395 kb on - strand, within GFF4557at 342.395 kb on - strand, within GFF4557at 342.398 kb on + strand, within GFF4557at 342.399 kb on - strand, within GFF4557at 342.447 kb on - strand, within GFF4557at 342.447 kb on - strand, within GFF4557at 342.582 kb on + strandat 342.729 kb on - strand, within GFF4558at 342.818 kb on + strand, within GFF4558at 342.875 kb on + strand, within GFF4558at 342.876 kb on - strand, within GFF4558

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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342,262 + GFF4557 0.18 -1.8
342,263 - GFF4557 0.19 +0.2
342,395 - GFF4557 0.64 +0.3
342,395 - GFF4557 0.64 -0.3
342,395 - GFF4557 0.64 +0.4
342,398 + GFF4557 0.65 +0.9
342,399 - GFF4557 0.65 +0.4
342,447 - GFF4557 0.82 +0.1
342,447 - GFF4557 0.82 +0.0
342,582 + +0.3
342,729 - GFF4558 0.18 -1.4
342,818 + GFF4558 0.25 +0.9
342,875 + GFF4558 0.30 +0.4
342,876 - GFF4558 0.30 -0.5

Or see this region's nucleotide sequence