Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4118

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4115 and GFF4118 are separated by 115 nucleotides GFF4115 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 72,840 to 74,090 GFF4115 GFF4118 - tRNA-Thr-CGT, at 74,206 to 74,281 GFF4118 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1at 73.265 kb on - strand, within GFF4115at 73.285 kb on - strand, within GFF4115at 73.416 kb on + strand, within GFF4115at 73.416 kb on + strand, within GFF4115at 73.416 kb on + strand, within GFF4115at 73.416 kb on + strand, within GFF4115at 73.417 kb on - strand, within GFF4115at 73.457 kb on + strand, within GFF4115at 73.717 kb on + strand, within GFF4115at 73.848 kb on - strand, within GFF4115at 73.886 kb on + strand, within GFF4115at 74.049 kb on + strandat 74.051 kb on + strandat 74.088 kb on + strandat 74.167 kb on + strandat 74.213 kb on + strandat 74.256 kb on - strand, within GFF4118at 74.362 kb on + strandat 74.363 kb on - strandat 74.373 kb on - strandat 74.486 kb on - strandat 74.506 kb on - strandat 74.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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73,265 - GFF4115 0.34 -0.6
73,285 - GFF4115 0.36 -0.6
73,416 + GFF4115 0.46 -0.2
73,416 + GFF4115 0.46 +0.1
73,416 + GFF4115 0.46 -0.1
73,416 + GFF4115 0.46 +0.1
73,417 - GFF4115 0.46 -0.2
73,457 + GFF4115 0.49 -0.8
73,717 + GFF4115 0.70 -1.1
73,848 - GFF4115 0.81 +0.2
73,886 + GFF4115 0.84 -0.1
74,049 + -0.0
74,051 + -1.9
74,088 + -0.5
74,167 + -0.4
74,213 + +0.4
74,256 - GFF4118 0.66 -0.5
74,362 + -0.5
74,363 - +0.1
74,373 - +0.8
74,486 - -0.5
74,506 - -0.2
74,509 + -0.4

Or see this region's nucleotide sequence