Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3790 and GFF3791 are separated by 74 nucleotides GFF3791 and GFF3792 overlap by 7 nucleotides
GFF3790 - Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3), at 59,904 to 60,914
GFF3790
GFF3791 - Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2), at 60,989 to 62,224
GFF3791
GFF3792 - Pyridine nucleotide-disulphide oxidoreductase family protein, at 62,218 to 63,459
GFF3792
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -1
0
1
2 at 60.059 kb on + strand, within GFF3790 at 60.059 kb on + strand, within GFF3790 at 60.186 kb on - strand, within GFF3790 at 60.457 kb on - strand, within GFF3790 at 60.457 kb on - strand, within GFF3790 at 60.469 kb on - strand, within GFF3790 at 60.510 kb on - strand, within GFF3790 at 60.644 kb on - strand, within GFF3790 at 60.659 kb on + strand, within GFF3790 at 60.689 kb on + strand, within GFF3790 at 60.690 kb on - strand, within GFF3790 at 60.690 kb on - strand, within GFF3790 at 60.693 kb on + strand, within GFF3790 at 60.693 kb on + strand, within GFF3790 at 60.693 kb on + strand, within GFF3790 at 60.817 kb on - strand at 60.926 kb on + strand at 60.938 kb on + strand at 61.161 kb on + strand, within GFF3791 at 61.174 kb on - strand, within GFF3791 at 61.174 kb on - strand, within GFF3791 at 61.259 kb on - strand, within GFF3791 at 61.289 kb on + strand, within GFF3791 at 61.318 kb on - strand, within GFF3791 at 61.347 kb on - strand, within GFF3791 at 61.362 kb on + strand, within GFF3791 at 61.370 kb on - strand, within GFF3791 at 61.389 kb on - strand, within GFF3791 at 61.501 kb on + strand, within GFF3791 at 61.604 kb on - strand, within GFF3791 at 61.681 kb on + strand, within GFF3791 at 61.778 kb on + strand, within GFF3791 at 62.186 kb on - strand at 62.665 kb on + strand, within GFF3792 at 62.687 kb on - strand, within GFF3792 at 63.022 kb on + strand, within GFF3792 at 63.199 kb on - strand, within GFF3792
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI remove 60,059 + GFF3790 0.15 -0.7 60,059 + GFF3790 0.15 +1.3 60,186 - GFF3790 0.28 +0.2 60,457 - GFF3790 0.55 -0.4 60,457 - GFF3790 0.55 +0.2 60,469 - GFF3790 0.56 +0.1 60,510 - GFF3790 0.60 -0.0 60,644 - GFF3790 0.73 -1.0 60,659 + GFF3790 0.75 +0.5 60,689 + GFF3790 0.78 +0.2 60,690 - GFF3790 0.78 +0.6 60,690 - GFF3790 0.78 +0.6 60,693 + GFF3790 0.78 -0.5 60,693 + GFF3790 0.78 -0.6 60,693 + GFF3790 0.78 -0.2 60,817 - -0.1 60,926 + +2.4 60,938 + +1.7 61,161 + GFF3791 0.14 +0.7 61,174 - GFF3791 0.15 -0.2 61,174 - GFF3791 0.15 +0.3 61,259 - GFF3791 0.22 +0.4 61,289 + GFF3791 0.24 +0.3 61,318 - GFF3791 0.27 +0.6 61,347 - GFF3791 0.29 +0.2 61,362 + GFF3791 0.30 -0.2 61,370 - GFF3791 0.31 +0.3 61,389 - GFF3791 0.32 -0.2 61,501 + GFF3791 0.41 -0.1 61,604 - GFF3791 0.50 +0.5 61,681 + GFF3791 0.56 -0.3 61,778 + GFF3791 0.64 -0.6 62,186 - +0.2 62,665 + GFF3792 0.36 +0.2 62,687 - GFF3792 0.38 +0.3 63,022 + GFF3792 0.65 -0.2 63,199 - GFF3792 0.79 -0.8
Or see this region's nucleotide sequence