Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2664

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2662 and GFF2663 are separated by 105 nucleotidesGFF2663 and GFF2664 are separated by 137 nucleotidesGFF2664 and GFF2665 are separated by 26 nucleotides GFF2662 - FIG01045240: hypothetical protein, at 184,981 to 185,205 GFF2662 GFF2663 - Thiol peroxidase, Tpx-type (EC 1.11.1.15), at 185,311 to 185,829 GFF2663 GFF2664 - FIG01200701: possible membrane protein, at 185,967 to 186,791 GFF2664 GFF2665 - Invasin-like protein, at 186,818 to 188,800 GFF2665 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1at 185.215 kb on - strandat 185.334 kb on + strandat 185.350 kb on - strandat 185.384 kb on - strand, within GFF2663at 185.543 kb on + strand, within GFF2663at 186.169 kb on - strand, within GFF2664at 186.448 kb on - strand, within GFF2664at 186.767 kb on - strandat 186.792 kb on - strandat 187.079 kb on - strand, within GFF2665at 187.147 kb on + strand, within GFF2665at 187.166 kb on + strand, within GFF2665at 187.167 kb on - strand, within GFF2665at 187.167 kb on - strand, within GFF2665at 187.170 kb on - strand, within GFF2665at 187.172 kb on + strand, within GFF2665at 187.173 kb on - strand, within GFF2665at 187.173 kb on - strand, within GFF2665at 187.223 kb on + strand, within GFF2665at 187.398 kb on + strand, within GFF2665at 187.398 kb on + strand, within GFF2665at 187.597 kb on + strand, within GFF2665at 187.598 kb on - strand, within GFF2665

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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185,215 - -0.3
185,334 + +0.0
185,350 - +1.3
185,384 - GFF2663 0.14 -1.0
185,543 + GFF2663 0.45 +0.8
186,169 - GFF2664 0.24 -1.3
186,448 - GFF2664 0.58 -0.5
186,767 - -0.2
186,792 - -0.2
187,079 - GFF2665 0.13 +0.9
187,147 + GFF2665 0.17 -1.2
187,166 + GFF2665 0.18 -0.2
187,167 - GFF2665 0.18 +1.7
187,167 - GFF2665 0.18 -0.2
187,170 - GFF2665 0.18 +0.1
187,172 + GFF2665 0.18 +0.5
187,173 - GFF2665 0.18 -0.0
187,173 - GFF2665 0.18 -0.0
187,223 + GFF2665 0.20 -2.6
187,398 + GFF2665 0.29 -0.2
187,398 + GFF2665 0.29 -0.6
187,597 + GFF2665 0.39 -0.6
187,598 - GFF2665 0.39 -0.5

Or see this region's nucleotide sequence