Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2575 and GFF2576 are separated by 76 nucleotides GFF2576 and GFF2577 are separated by 177 nucleotides GFF2577 and GFF2578 are separated by 263 nucleotides
GFF2575 - L-asparagine permease, at 96,267 to 97,760
GFF2575
GFF2576 - Putative outer membrane lipoprotein, at 97,837 to 98,025
GFF2576
GFF2577 - FIG00638561: hypothetical protein, at 98,203 to 99,264
GFF2577
GFF2578 - Probable tonB-dependent receptor yncD precursor, at 99,528 to 101,648
GFF2578
Position (kb) 98
99
100 Strain fitness (log2 ratio) -1
0
1 at 97.323 kb on + strand, within GFF2575 at 97.353 kb on + strand, within GFF2575 at 97.354 kb on - strand, within GFF2575 at 97.377 kb on + strand, within GFF2575 at 97.452 kb on - strand, within GFF2575 at 97.518 kb on - strand, within GFF2575 at 97.538 kb on + strand, within GFF2575 at 97.538 kb on + strand, within GFF2575 at 97.564 kb on + strand, within GFF2575 at 97.564 kb on + strand, within GFF2575 at 97.611 kb on + strand at 97.611 kb on + strand at 97.614 kb on - strand at 97.614 kb on - strand at 97.641 kb on - strand at 97.798 kb on + strand at 97.849 kb on - strand at 97.906 kb on - strand, within GFF2576 at 97.907 kb on + strand, within GFF2576 at 97.907 kb on + strand, within GFF2576 at 98.141 kb on + strand at 98.344 kb on - strand, within GFF2577 at 98.355 kb on - strand, within GFF2577 at 98.355 kb on - strand, within GFF2577 at 98.406 kb on - strand, within GFF2577 at 98.416 kb on - strand, within GFF2577 at 98.565 kb on + strand, within GFF2577 at 98.565 kb on + strand, within GFF2577 at 98.602 kb on - strand, within GFF2577 at 98.769 kb on + strand, within GFF2577 at 98.770 kb on - strand, within GFF2577 at 98.799 kb on - strand, within GFF2577 at 98.863 kb on - strand, within GFF2577 at 98.863 kb on - strand, within GFF2577 at 98.896 kb on + strand, within GFF2577 at 98.897 kb on - strand, within GFF2577 at 98.897 kb on - strand, within GFF2577 at 99.056 kb on - strand, within GFF2577 at 99.056 kb on - strand, within GFF2577 at 99.187 kb on - strand at 99.215 kb on - strand at 99.220 kb on + strand at 99.256 kb on + strand at 99.257 kb on - strand at 99.257 kb on - strand at 99.290 kb on + strand at 99.290 kb on + strand at 99.291 kb on - strand at 99.292 kb on + strand at 99.293 kb on - strand at 99.293 kb on - strand at 99.357 kb on + strand at 99.515 kb on - strand at 99.672 kb on - strand at 99.789 kb on + strand, within GFF2578 at 99.864 kb on + strand, within GFF2578 at 99.998 kb on - strand, within GFF2578 at 100.001 kb on - strand, within GFF2578 at 100.135 kb on - strand, within GFF2578 at 100.137 kb on + strand, within GFF2578 at 100.137 kb on + strand, within GFF2578
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI remove 97,323 + GFF2575 0.71 -0.3 97,353 + GFF2575 0.73 -0.4 97,354 - GFF2575 0.73 -0.0 97,377 + GFF2575 0.74 -0.4 97,452 - GFF2575 0.79 +0.3 97,518 - GFF2575 0.84 -0.3 97,538 + GFF2575 0.85 -0.2 97,538 + GFF2575 0.85 +0.1 97,564 + GFF2575 0.87 -0.4 97,564 + GFF2575 0.87 -0.5 97,611 + -0.1 97,611 + +0.0 97,614 - +1.7 97,614 - -0.2 97,641 - -0.0 97,798 + -0.1 97,849 - +0.2 97,906 - GFF2576 0.37 +0.1 97,907 + GFF2576 0.37 +1.2 97,907 + GFF2576 0.37 -0.1 98,141 + +0.5 98,344 - GFF2577 0.13 -0.3 98,355 - GFF2577 0.14 +0.1 98,355 - GFF2577 0.14 -0.3 98,406 - GFF2577 0.19 -0.2 98,416 - GFF2577 0.20 +0.1 98,565 + GFF2577 0.34 -1.1 98,565 + GFF2577 0.34 +0.4 98,602 - GFF2577 0.38 +0.2 98,769 + GFF2577 0.53 +0.0 98,770 - GFF2577 0.53 +0.3 98,799 - GFF2577 0.56 -0.2 98,863 - GFF2577 0.62 +1.6 98,863 - GFF2577 0.62 +0.5 98,896 + GFF2577 0.65 -0.4 98,897 - GFF2577 0.65 +0.3 98,897 - GFF2577 0.65 -0.9 99,056 - GFF2577 0.80 +0.8 99,056 - GFF2577 0.80 -0.4 99,187 - +0.1 99,215 - -0.6 99,220 + +0.0 99,256 + -0.4 99,257 - +0.9 99,257 - -0.4 99,290 + +0.4 99,290 + +0.6 99,291 - +0.1 99,292 + +0.7 99,293 - +0.1 99,293 - -0.3 99,357 + +0.3 99,515 - -0.4 99,672 - +0.5 99,789 + GFF2578 0.12 -0.8 99,864 + GFF2578 0.16 +0.3 99,998 - GFF2578 0.22 -0.1 100,001 - GFF2578 0.22 -1.5 100,135 - GFF2578 0.29 -0.6 100,137 + GFF2578 0.29 -1.1 100,137 + GFF2578 0.29 +0.4
Or see this region's nucleotide sequence