Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2342

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2341 and GFF2342 are separated by 210 nucleotidesGFF2342 and GFF2343 are separated by 368 nucleotides GFF2341 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 132,233 to 133,966 GFF2341 GFF2342 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 134,177 to 136,828 GFF2342 GFF2343 - Acetylornithine deacetylase (EC 3.5.1.16), at 137,197 to 138,348 GFF2343 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -1 0 1at 133.204 kb on - strand, within GFF2341at 133.214 kb on - strand, within GFF2341at 133.360 kb on - strand, within GFF2341at 133.369 kb on + strand, within GFF2341at 133.372 kb on + strand, within GFF2341at 133.438 kb on + strand, within GFF2341at 133.438 kb on + strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.447 kb on + strand, within GFF2341at 133.485 kb on + strand, within GFF2341at 133.529 kb on - strand, within GFF2341at 133.531 kb on - strand, within GFF2341at 133.576 kb on - strand, within GFF2341at 133.576 kb on - strand, within GFF2341at 133.611 kb on + strand, within GFF2341at 133.623 kb on + strand, within GFF2341at 133.697 kb on + strand, within GFF2341at 133.701 kb on + strand, within GFF2341at 133.702 kb on - strand, within GFF2341at 133.704 kb on + strand, within GFF2341at 133.704 kb on + strand, within GFF2341at 133.705 kb on - strand, within GFF2341at 133.705 kb on - strand, within GFF2341at 133.812 kb on + strandat 133.818 kb on - strandat 133.860 kb on + strandat 133.865 kb on - strandat 133.899 kb on + strandat 133.942 kb on + strandat 133.952 kb on + strandat 133.953 kb on - strandat 133.966 kb on + strandat 134.127 kb on + strandat 134.127 kb on + strandat 134.127 kb on + strandat 134.127 kb on + strandat 134.128 kb on - strandat 134.148 kb on - strandat 134.148 kb on - strandat 134.148 kb on - strandat 134.326 kb on - strandat 134.410 kb on + strandat 134.411 kb on - strandat 134.860 kb on + strand, within GFF2342at 134.861 kb on - strand, within GFF2342at 134.864 kb on - strand, within GFF2342at 135.230 kb on - strand, within GFF2342at 135.414 kb on + strand, within GFF2342at 135.653 kb on - strand, within GFF2342at 135.759 kb on + strand, within GFF2342at 136.094 kb on - strand, within GFF2342at 136.100 kb on + strand, within GFF2342at 136.174 kb on + strand, within GFF2342at 136.174 kb on + strand, within GFF2342at 136.174 kb on + strand, within GFF2342at 136.174 kb on + strand, within GFF2342at 136.175 kb on - strand, within GFF2342at 136.175 kb on - strand, within GFF2342at 136.178 kb on + strand, within GFF2342at 136.178 kb on + strand, within GFF2342at 136.267 kb on + strand, within GFF2342at 136.308 kb on - strand, within GFF2342at 136.340 kb on - strand, within GFF2342at 136.340 kb on - strand, within GFF2342at 136.355 kb on + strand, within GFF2342at 136.394 kb on - strand, within GFF2342at 136.451 kb on + strand, within GFF2342at 136.452 kb on - strand, within GFF2342at 136.790 kb on - strandat 136.790 kb on - strandat 136.801 kb on + strandat 136.828 kb on + strandat 136.857 kb on - strandat 136.907 kb on - strandat 137.088 kb on + strandat 137.192 kb on - strandat 137.192 kb on - strandat 137.198 kb on + strandat 137.199 kb on - strandat 137.219 kb on - strandat 137.221 kb on + strandat 137.222 kb on - strandat 137.222 kb on - strandat 137.270 kb on + strandat 137.329 kb on + strand, within GFF2343at 137.330 kb on - strand, within GFF2343at 137.355 kb on + strand, within GFF2343at 137.360 kb on + strand, within GFF2343at 137.455 kb on + strand, within GFF2343at 137.515 kb on - strand, within GFF2343at 137.536 kb on + strand, within GFF2343at 137.797 kb on - strand, within GFF2343at 137.802 kb on + strand, within GFF2343at 137.802 kb on + strand, within GFF2343

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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133,204 - GFF2341 0.56 +0.1
133,214 - GFF2341 0.57 +0.2
133,360 - GFF2341 0.65 +0.3
133,369 + GFF2341 0.66 -0.5
133,372 + GFF2341 0.66 -0.7
133,438 + GFF2341 0.69 +0.4
133,438 + GFF2341 0.69 -0.3
133,439 - GFF2341 0.70 -0.6
133,439 - GFF2341 0.70 -0.3
133,439 - GFF2341 0.70 +0.6
133,439 - GFF2341 0.70 +0.1
133,447 + GFF2341 0.70 -0.0
133,485 + GFF2341 0.72 +0.5
133,529 - GFF2341 0.75 +0.3
133,531 - GFF2341 0.75 +1.2
133,576 - GFF2341 0.77 -0.7
133,576 - GFF2341 0.77 -1.0
133,611 + GFF2341 0.79 +0.1
133,623 + GFF2341 0.80 +0.5
133,697 + GFF2341 0.84 -0.1
133,701 + GFF2341 0.85 +0.2
133,702 - GFF2341 0.85 +0.0
133,704 + GFF2341 0.85 +0.1
133,704 + GFF2341 0.85 +0.1
133,705 - GFF2341 0.85 -0.1
133,705 - GFF2341 0.85 +0.6
133,812 + +0.1
133,818 - -0.2
133,860 + -0.1
133,865 - +0.0
133,899 + +0.1
133,942 + -0.5
133,952 + -0.5
133,953 - -0.7
133,966 + +0.1
134,127 + +1.5
134,127 + +0.2
134,127 + -0.3
134,127 + +0.3
134,128 - +0.1
134,148 - -0.2
134,148 - +0.9
134,148 - -0.1
134,326 - +0.0
134,410 + +0.1
134,411 - +0.3
134,860 + GFF2342 0.26 +0.2
134,861 - GFF2342 0.26 +0.3
134,864 - GFF2342 0.26 -0.1
135,230 - GFF2342 0.40 +1.0
135,414 + GFF2342 0.47 +1.4
135,653 - GFF2342 0.56 +0.6
135,759 + GFF2342 0.60 -0.1
136,094 - GFF2342 0.72 -0.0
136,100 + GFF2342 0.73 +0.0
136,174 + GFF2342 0.75 -1.0
136,174 + GFF2342 0.75 -0.3
136,174 + GFF2342 0.75 +1.0
136,174 + GFF2342 0.75 +0.1
136,175 - GFF2342 0.75 +0.6
136,175 - GFF2342 0.75 +0.2
136,178 + GFF2342 0.75 +0.2
136,178 + GFF2342 0.75 +0.2
136,267 + GFF2342 0.79 +0.1
136,308 - GFF2342 0.80 +0.0
136,340 - GFF2342 0.82 +0.4
136,340 - GFF2342 0.82 +0.6
136,355 + GFF2342 0.82 -0.0
136,394 - GFF2342 0.84 -0.4
136,451 + GFF2342 0.86 -0.2
136,452 - GFF2342 0.86 -0.6
136,790 - -0.4
136,790 - -1.6
136,801 + -0.3
136,828 + -0.8
136,857 - -0.4
136,907 - -0.1
137,088 + +0.0
137,192 - -0.1
137,192 - -0.7
137,198 + -0.3
137,199 - -0.3
137,219 - -0.3
137,221 + -0.4
137,222 - -0.7
137,222 - +0.6
137,270 + -0.7
137,329 + GFF2343 0.11 +0.6
137,330 - GFF2343 0.12 +0.4
137,355 + GFF2343 0.14 -0.2
137,360 + GFF2343 0.14 +0.9
137,455 + GFF2343 0.22 +1.0
137,515 - GFF2343 0.28 -0.1
137,536 + GFF2343 0.29 +0.0
137,797 - GFF2343 0.52 +0.6
137,802 + GFF2343 0.53 -1.0
137,802 + GFF2343 0.53 -0.6

Or see this region's nucleotide sequence