Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1767

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1766 and GFF1767 are separated by 25 nucleotidesGFF1767 and GFF1768 overlap by 14 nucleotidesGFF1768 and GFF1769 are separated by 24 nucleotides GFF1766 - D-galactonate transporter, at 69,329 to 70,627 GFF1766 GFF1767 - Sensor protein torS (EC 2.7.3.-), at 70,653 to 73,340 GFF1767 GFF1768 - hypothetical protein, at 73,327 to 73,443 GFF1768 GFF1769 - Periplasmic protein torT precursor, at 73,468 to 74,508 GFF1769 Position (kb) 70 71 72 73 74Strain fitness (log2 ratio) -1 0 1at 69.724 kb on + strand, within GFF1766at 69.768 kb on - strand, within GFF1766at 69.878 kb on - strand, within GFF1766at 69.934 kb on + strand, within GFF1766at 69.953 kb on + strand, within GFF1766at 69.953 kb on + strand, within GFF1766at 69.954 kb on - strand, within GFF1766at 70.054 kb on + strand, within GFF1766at 70.055 kb on - strand, within GFF1766at 70.096 kb on + strand, within GFF1766at 70.127 kb on - strand, within GFF1766at 70.186 kb on - strand, within GFF1766at 70.213 kb on - strand, within GFF1766at 70.288 kb on + strand, within GFF1766at 70.354 kb on + strand, within GFF1766at 70.402 kb on + strand, within GFF1766at 70.403 kb on - strand, within GFF1766at 70.403 kb on - strand, within GFF1766at 70.492 kb on + strand, within GFF1766at 70.554 kb on - strandat 70.554 kb on - strandat 70.654 kb on + strandat 70.655 kb on - strandat 70.712 kb on + strandat 70.718 kb on + strandat 70.719 kb on - strandat 70.722 kb on - strandat 70.725 kb on + strandat 70.725 kb on + strandat 70.827 kb on - strandat 71.093 kb on + strand, within GFF1767at 71.094 kb on - strand, within GFF1767at 71.307 kb on - strand, within GFF1767at 71.310 kb on - strand, within GFF1767at 71.310 kb on - strand, within GFF1767at 71.310 kb on - strand, within GFF1767at 71.325 kb on - strand, within GFF1767at 71.328 kb on - strand, within GFF1767at 71.388 kb on - strand, within GFF1767at 71.585 kb on + strand, within GFF1767at 71.613 kb on - strand, within GFF1767at 71.649 kb on + strand, within GFF1767at 71.681 kb on + strand, within GFF1767at 71.681 kb on + strand, within GFF1767at 71.682 kb on - strand, within GFF1767at 71.731 kb on - strand, within GFF1767at 71.808 kb on - strand, within GFF1767at 71.892 kb on - strand, within GFF1767at 71.930 kb on + strand, within GFF1767at 72.219 kb on - strand, within GFF1767at 72.354 kb on + strand, within GFF1767at 72.379 kb on - strand, within GFF1767at 72.388 kb on - strand, within GFF1767at 72.388 kb on - strand, within GFF1767at 72.419 kb on + strand, within GFF1767at 72.420 kb on - strand, within GFF1767at 72.478 kb on + strand, within GFF1767at 72.581 kb on - strand, within GFF1767at 72.678 kb on - strand, within GFF1767at 72.726 kb on + strand, within GFF1767at 72.727 kb on - strand, within GFF1767at 72.906 kb on - strand, within GFF1767at 72.967 kb on - strand, within GFF1767at 73.390 kb on + strand, within GFF1768at 73.515 kb on + strandat 73.518 kb on - strandat 73.547 kb on + strandat 73.547 kb on + strandat 73.629 kb on - strand, within GFF1769at 73.652 kb on - strand, within GFF1769at 73.652 kb on - strand, within GFF1769at 73.813 kb on - strand, within GFF1769at 73.840 kb on + strand, within GFF1769at 73.841 kb on - strand, within GFF1769at 73.880 kb on + strand, within GFF1769at 73.934 kb on - strand, within GFF1769at 74.055 kb on + strand, within GFF1769at 74.211 kb on + strand, within GFF1769

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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69,724 + GFF1766 0.30 +0.8
69,768 - GFF1766 0.34 +0.1
69,878 - GFF1766 0.42 -0.1
69,934 + GFF1766 0.47 +0.1
69,953 + GFF1766 0.48 -0.1
69,953 + GFF1766 0.48 +0.1
69,954 - GFF1766 0.48 +0.1
70,054 + GFF1766 0.56 -0.3
70,055 - GFF1766 0.56 +0.3
70,096 + GFF1766 0.59 -0.0
70,127 - GFF1766 0.61 +0.0
70,186 - GFF1766 0.66 +0.1
70,213 - GFF1766 0.68 +0.2
70,288 + GFF1766 0.74 -0.0
70,354 + GFF1766 0.79 +1.4
70,402 + GFF1766 0.83 -0.1
70,403 - GFF1766 0.83 -0.2
70,403 - GFF1766 0.83 -0.7
70,492 + GFF1766 0.90 -1.1
70,554 - -0.1
70,554 - -0.4
70,654 + +0.1
70,655 - -0.0
70,712 + +0.2
70,718 + +0.1
70,719 - -0.5
70,722 - -0.0
70,725 + +0.3
70,725 + -0.6
70,827 - +0.5
71,093 + GFF1767 0.16 -0.1
71,094 - GFF1767 0.16 +0.4
71,307 - GFF1767 0.24 -0.5
71,310 - GFF1767 0.24 -0.5
71,310 - GFF1767 0.24 +0.2
71,310 - GFF1767 0.24 +0.1
71,325 - GFF1767 0.25 -0.9
71,328 - GFF1767 0.25 +0.1
71,388 - GFF1767 0.27 +1.1
71,585 + GFF1767 0.35 -1.7
71,613 - GFF1767 0.36 -0.1
71,649 + GFF1767 0.37 +0.3
71,681 + GFF1767 0.38 +0.4
71,681 + GFF1767 0.38 -0.1
71,682 - GFF1767 0.38 +0.8
71,731 - GFF1767 0.40 +0.5
71,808 - GFF1767 0.43 -0.3
71,892 - GFF1767 0.46 +0.8
71,930 + GFF1767 0.48 +0.3
72,219 - GFF1767 0.58 -0.2
72,354 + GFF1767 0.63 +0.3
72,379 - GFF1767 0.64 -0.3
72,388 - GFF1767 0.65 -0.0
72,388 - GFF1767 0.65 +0.4
72,419 + GFF1767 0.66 -0.3
72,420 - GFF1767 0.66 +0.6
72,478 + GFF1767 0.68 -0.1
72,581 - GFF1767 0.72 -0.5
72,678 - GFF1767 0.75 -0.1
72,726 + GFF1767 0.77 +0.4
72,727 - GFF1767 0.77 +1.3
72,906 - GFF1767 0.84 -0.9
72,967 - GFF1767 0.86 +0.8
73,390 + GFF1768 0.54 -1.4
73,515 + +0.3
73,518 - +0.5
73,547 + +0.6
73,547 + -0.6
73,629 - GFF1769 0.15 +0.5
73,652 - GFF1769 0.18 -0.2
73,652 - GFF1769 0.18 -0.3
73,813 - GFF1769 0.33 +0.5
73,840 + GFF1769 0.36 +0.7
73,841 - GFF1769 0.36 +0.0
73,880 + GFF1769 0.40 -0.1
73,934 - GFF1769 0.45 +0.2
74,055 + GFF1769 0.56 -0.4
74,211 + GFF1769 0.71 -0.2

Or see this region's nucleotide sequence