Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2522

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2521 and PfGW456L13_2522 are separated by 72 nucleotidesPfGW456L13_2522 and PfGW456L13_2523 are separated by 228 nucleotides PfGW456L13_2521 - Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD3, at 2,787,383 to 2,788,963 _2521 PfGW456L13_2522 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,789,036 to 2,789,782 _2522 PfGW456L13_2523 - Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-), at 2,790,011 to 2,791,093 _2523 Position (kb) 2789 2790Strain fitness (log2 ratio) -1 0 1at 2788.146 kb on + strand, within PfGW456L13_2521at 2788.146 kb on + strand, within PfGW456L13_2521at 2788.146 kb on + strand, within PfGW456L13_2521at 2788.146 kb on + strand, within PfGW456L13_2521at 2788.147 kb on - strand, within PfGW456L13_2521at 2788.147 kb on - strand, within PfGW456L13_2521at 2788.279 kb on - strand, within PfGW456L13_2521at 2788.511 kb on - strand, within PfGW456L13_2521at 2788.511 kb on - strand, within PfGW456L13_2521at 2788.511 kb on - strand, within PfGW456L13_2521at 2788.640 kb on + strand, within PfGW456L13_2521at 2788.641 kb on - strand, within PfGW456L13_2521at 2788.641 kb on - strand, within PfGW456L13_2521at 2788.641 kb on - strand, within PfGW456L13_2521at 2788.800 kb on - strand, within PfGW456L13_2521at 2788.989 kb on + strandat 2789.004 kb on - strandat 2789.347 kb on + strand, within PfGW456L13_2522at 2789.348 kb on - strand, within PfGW456L13_2522at 2789.349 kb on + strand, within PfGW456L13_2522at 2789.349 kb on + strand, within PfGW456L13_2522at 2789.350 kb on - strand, within PfGW456L13_2522at 2789.350 kb on - strand, within PfGW456L13_2522at 2789.350 kb on - strand, within PfGW456L13_2522at 2789.442 kb on + strand, within PfGW456L13_2522at 2789.556 kb on - strand, within PfGW456L13_2522at 2789.604 kb on - strand, within PfGW456L13_2522at 2789.764 kb on + strandat 2789.764 kb on + strandat 2789.782 kb on + strandat 2789.782 kb on + strandat 2789.810 kb on - strandat 2789.866 kb on - strandat 2789.900 kb on + strandat 2789.900 kb on + strandat 2789.943 kb on - strandat 2790.026 kb on - strandat 2790.618 kb on + strand, within PfGW456L13_2523at 2790.619 kb on - strand, within PfGW456L13_2523

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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2,788,146 + PfGW456L13_2521 0.48 +0.1
2,788,146 + PfGW456L13_2521 0.48 -1.0
2,788,146 + PfGW456L13_2521 0.48 +0.8
2,788,146 + PfGW456L13_2521 0.48 +0.9
2,788,147 - PfGW456L13_2521 0.48 +0.0
2,788,147 - PfGW456L13_2521 0.48 +0.8
2,788,279 - PfGW456L13_2521 0.57 +0.4
2,788,511 - PfGW456L13_2521 0.71 +0.9
2,788,511 - PfGW456L13_2521 0.71 -0.3
2,788,511 - PfGW456L13_2521 0.71 -0.2
2,788,640 + PfGW456L13_2521 0.80 +0.7
2,788,641 - PfGW456L13_2521 0.80 -0.3
2,788,641 - PfGW456L13_2521 0.80 +1.4
2,788,641 - PfGW456L13_2521 0.80 +0.9
2,788,800 - PfGW456L13_2521 0.90 +0.1
2,788,989 + +0.3
2,789,004 - -0.5
2,789,347 + PfGW456L13_2522 0.42 -1.6
2,789,348 - PfGW456L13_2522 0.42 +0.2
2,789,349 + PfGW456L13_2522 0.42 -0.1
2,789,349 + PfGW456L13_2522 0.42 -0.3
2,789,350 - PfGW456L13_2522 0.42 -0.9
2,789,350 - PfGW456L13_2522 0.42 +0.3
2,789,350 - PfGW456L13_2522 0.42 +0.0
2,789,442 + PfGW456L13_2522 0.54 -0.8
2,789,556 - PfGW456L13_2522 0.70 -0.2
2,789,604 - PfGW456L13_2522 0.76 -1.4
2,789,764 + +0.1
2,789,764 + +0.5
2,789,782 + -0.8
2,789,782 + +0.5
2,789,810 - +0.1
2,789,866 - +0.4
2,789,900 + -0.0
2,789,900 + +0.8
2,789,943 - +0.0
2,790,026 - +0.2
2,790,618 + PfGW456L13_2523 0.56 +0.3
2,790,619 - PfGW456L13_2523 0.56 -0.3

Or see this region's nucleotide sequence