Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_109

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_108 and PfGW456L13_109 are separated by 387 nucleotidesPfGW456L13_109 and PfGW456L13_110 are separated by 172 nucleotides PfGW456L13_108 - exported protein, conserved, at 125,397 to 127,466 _108 PfGW456L13_109 - FIG00963947: hypothetical protein, at 127,854 to 128,324 _109 PfGW456L13_110 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 128,497 to 129,129 _110 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1at 126.878 kb on + strand, within PfGW456L13_108at 126.918 kb on + strand, within PfGW456L13_108at 126.918 kb on + strand, within PfGW456L13_108at 127.151 kb on + strand, within PfGW456L13_108at 127.151 kb on + strand, within PfGW456L13_108at 127.151 kb on + strand, within PfGW456L13_108at 127.152 kb on - strand, within PfGW456L13_108at 127.152 kb on - strand, within PfGW456L13_108at 127.152 kb on - strand, within PfGW456L13_108at 127.398 kb on + strandat 127.398 kb on + strandat 127.398 kb on + strandat 127.398 kb on + strandat 127.399 kb on - strandat 127.399 kb on - strandat 127.418 kb on + strandat 127.418 kb on + strandat 127.483 kb on + strandat 127.551 kb on + strandat 127.551 kb on + strandat 127.551 kb on + strandat 127.551 kb on + strandat 127.552 kb on - strandat 127.552 kb on - strandat 127.552 kb on - strandat 127.560 kb on + strandat 127.560 kb on + strandat 127.578 kb on - strandat 127.616 kb on + strandat 127.760 kb on - strandat 127.760 kb on - strandat 127.760 kb on - strandat 127.760 kb on - strandat 127.760 kb on - strandat 127.763 kb on - strandat 127.825 kb on + strandat 127.826 kb on - strandat 127.826 kb on - strandat 127.826 kb on - strandat 127.867 kb on + strandat 127.867 kb on + strandat 127.867 kb on + strandat 127.867 kb on + strandat 127.867 kb on + strandat 127.867 kb on + strandat 127.867 kb on + strandat 127.868 kb on - strandat 127.868 kb on - strandat 127.868 kb on - strandat 127.868 kb on - strandat 127.868 kb on - strandat 127.868 kb on - strandat 127.874 kb on + strandat 127.880 kb on + strandat 127.880 kb on + strandat 127.881 kb on - strandat 127.881 kb on - strandat 127.881 kb on - strandat 128.084 kb on + strand, within PfGW456L13_109at 128.084 kb on + strand, within PfGW456L13_109at 128.210 kb on + strand, within PfGW456L13_109at 128.211 kb on - strand, within PfGW456L13_109at 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.322 kb on + strandat 128.323 kb on - strandat 128.323 kb on - strandat 128.323 kb on - strandat 128.323 kb on - strandat 128.323 kb on - strandat 128.323 kb on - strandat 128.396 kb on - strandat 128.396 kb on - strandat 128.396 kb on - strandat 128.458 kb on + strandat 128.458 kb on + strandat 128.459 kb on - strandat 128.459 kb on - strandat 128.627 kb on + strand, within PfGW456L13_110at 128.628 kb on - strand, within PfGW456L13_110at 128.679 kb on - strand, within PfGW456L13_110at 128.726 kb on + strand, within PfGW456L13_110at 128.726 kb on + strand, within PfGW456L13_110at 128.727 kb on - strand, within PfGW456L13_110at 128.745 kb on - strand, within PfGW456L13_110at 129.081 kb on + strandat 129.081 kb on + strandat 129.081 kb on + strandat 129.081 kb on + strandat 129.082 kb on - strandat 129.082 kb on - strandat 129.127 kb on + strandat 129.128 kb on - strandat 129.255 kb on + strandat 129.256 kb on - strandat 129.256 kb on - strandat 129.256 kb on - strandat 129.301 kb on + strandat 129.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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126,878 + PfGW456L13_108 0.72 -0.7
126,918 + PfGW456L13_108 0.73 -1.1
126,918 + PfGW456L13_108 0.73 +0.6
127,151 + PfGW456L13_108 0.85 +0.1
127,151 + PfGW456L13_108 0.85 +0.4
127,151 + PfGW456L13_108 0.85 +0.2
127,152 - PfGW456L13_108 0.85 -0.8
127,152 - PfGW456L13_108 0.85 -0.4
127,152 - PfGW456L13_108 0.85 -0.5
127,398 + -0.3
127,398 + +0.2
127,398 + +0.6
127,398 + -0.3
127,399 - +0.3
127,399 - +0.7
127,418 + -0.4
127,418 + -0.4
127,483 + +1.3
127,551 + +0.4
127,551 + +0.6
127,551 + -0.2
127,551 + -0.2
127,552 - +0.7
127,552 - -2.5
127,552 - -0.9
127,560 + +0.9
127,560 + -0.3
127,578 - +1.1
127,616 + +0.4
127,760 - -0.4
127,760 - -0.4
127,760 - +0.1
127,760 - +0.5
127,760 - +0.7
127,763 - +0.1
127,825 + -1.1
127,826 - +1.0
127,826 - +0.3
127,826 - +0.3
127,867 + +0.2
127,867 + +0.6
127,867 + +0.4
127,867 + -0.7
127,867 + +0.9
127,867 + -1.4
127,867 + -0.1
127,868 - +0.7
127,868 - +0.1
127,868 - -1.1
127,868 - +0.8
127,868 - +0.8
127,868 - -0.0
127,874 + +0.7
127,880 + -0.2
127,880 + +0.3
127,881 - +1.3
127,881 - -0.3
127,881 - +0.7
128,084 + PfGW456L13_109 0.49 -0.3
128,084 + PfGW456L13_109 0.49 +0.1
128,210 + PfGW456L13_109 0.76 -0.2
128,211 - PfGW456L13_109 0.76 -1.1
128,322 + +0.7
128,322 + -0.7
128,322 + -0.1
128,322 + +0.2
128,322 + -0.6
128,322 + -0.5
128,322 + +0.1
128,322 + +0.8
128,322 + +0.5
128,323 - -0.4
128,323 - +0.2
128,323 - -0.9
128,323 - -0.3
128,323 - +0.4
128,323 - +0.2
128,396 - +0.5
128,396 - +0.6
128,396 - +0.3
128,458 + -0.8
128,458 + -1.1
128,459 - -0.2
128,459 - -0.2
128,627 + PfGW456L13_110 0.21 +1.4
128,628 - PfGW456L13_110 0.21 -1.2
128,679 - PfGW456L13_110 0.29 -1.1
128,726 + PfGW456L13_110 0.36 -0.5
128,726 + PfGW456L13_110 0.36 +0.4
128,727 - PfGW456L13_110 0.36 +0.5
128,745 - PfGW456L13_110 0.39 -0.1
129,081 + +1.2
129,081 + -0.1
129,081 + -0.4
129,081 + +0.6
129,082 - +0.8
129,082 - -0.5
129,127 + -1.2
129,128 - -0.7
129,255 + -0.1
129,256 - +0.7
129,256 - +0.3
129,256 - +0.8
129,301 + +0.2
129,302 - +0.0

Or see this region's nucleotide sequence