Strain Fitness in Pseudomonas putida KT2440 around PP_5352

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
6,099,855	+		PP_5351	0.47	-0.6
6,099,855	+		PP_5351	0.47	+0.4
6,099,856	-		PP_5351	0.47	-0.5
6,099,856	-		PP_5351	0.47	+1.1
6,099,856	-		PP_5351	0.47	+0.5
6,099,859	-		PP_5351	0.47	+0.0
6,099,876	-		PP_5351	0.48	+0.4
6,099,962	-				+1.1
6,100,044	+		PP_5351	0.59	+0.1
6,100,083	+		PP_5351	0.62	+0.6
6,100,084	-		PP_5351	0.62	-1.0
6,100,086	+		PP_5351	0.62	+0.7
6,100,086	+		PP_5351	0.62	+0.2
6,100,086	+		PP_5351	0.62	+0.9
6,100,087	-		PP_5351	0.62	+0.5
6,100,087	-		PP_5351	0.62	-0.0
6,100,182	+		PP_5351	0.69	-0.0
6,100,182	+		PP_5351	0.69	-2.0
6,100,183	-		PP_5351	0.69	+0.3
6,100,291	+		PP_5351	0.76	+0.4
6,100,291	+		PP_5351	0.76	+0.1
6,100,291	+		PP_5351	0.76	+0.6
6,100,291	+		PP_5351	0.76	+0.9
6,100,382	+		PP_5351	0.83	-2.0
6,100,383	-		PP_5351	0.83	+0.9
6,100,425	+		PP_5351	0.86	-0.0
6,100,426	-		PP_5351	0.86	+0.9
6,100,510	+				+0.5
6,100,511	-				+0.3
6,100,668	+				-0.6
6,100,668	+				+0.1
6,100,797	-				-0.0
6,100,802	+				-0.9
6,100,803	-				+0.1
6,100,807	+				+0.1
6,100,811	+				-0.6
6,100,837	+				+0.6
6,101,331	+		PP_5352	0.22	-0.2
6,101,377	+		PP_5352	0.24	-1.6
6,101,377	+		PP_5352	0.24	-2.3
6,101,377	+		PP_5352	0.24	+0.0
6,101,377	+		PP_5352	0.24	-1.4
6,101,377	+		PP_5352	0.24	-0.9
6,101,377	+		PP_5352	0.24	+0.4
6,101,377	+		PP_5352	0.24	-0.1
6,101,378	-		PP_5352	0.24	-1.3
6,101,378	-		PP_5352	0.24	-2.1
6,101,378	-		PP_5352	0.24	+1.9
6,101,379	+		PP_5352	0.24	-0.4
6,101,485	+		PP_5352	0.29	-1.1
6,101,485	+		PP_5352	0.29	-0.7
6,101,486	-		PP_5352	0.29	-0.7
6,101,529	+		PP_5352	0.31	-1.7
6,101,617	+		PP_5352	0.35	-0.5
6,101,617	+		PP_5352	0.35	-0.4
6,101,618	-		PP_5352	0.35	-0.9
6,101,618	-		PP_5352	0.35	-0.8
6,101,618	-		PP_5352	0.35	-0.8
6,101,656	+		PP_5352	0.37	-0.3
6,101,704	+		PP_5352	0.39	+0.3
6,101,704	+		PP_5352	0.39	-1.7
6,101,704	-		PP_5352	0.39	-1.3
6,101,827	+		PP_5352	0.45	-0.7
6,101,827	+		PP_5352	0.45	-0.7
6,101,828	-		PP_5352	0.45	-1.4
6,101,828	-		PP_5352	0.45	+1.6
6,101,851	+		PP_5352	0.46	-1.7
6,101,851	+		PP_5352	0.46	-0.4
6,101,851	+		PP_5352	0.46	+0.4
6,101,852	-		PP_5352	0.46	-2.1
6,101,852	-		PP_5352	0.46	-1.6
6,101,918	-		PP_5352	0.49	-1.8
6,101,918	-		PP_5352	0.49	-1.1
6,101,986	+		PP_5352	0.52	+0.0
6,101,986	+		PP_5352	0.52	+1.5
6,101,986	+		PP_5352	0.52	-1.5
6,101,987	-		PP_5352	0.52	+1.1
6,102,037	+		PP_5352	0.54	+0.9
6,102,038	-		PP_5352	0.54	-0.7
6,102,038	-		PP_5352	0.54	+0.6
6,102,291	+		PP_5352	0.66	-1.1
6,102,291	+		PP_5352	0.66	-0.6
6,102,291	+		PP_5352	0.66	-0.7
6,102,292	-		PP_5352	0.66	-1.8
6,102,334	+		PP_5352	0.68	-0.5
6,102,334	+		PP_5352	0.68	-0.7
6,102,335	-		PP_5352	0.68	+0.2
6,102,335	-		PP_5352	0.68	-2.4
6,102,374	+		PP_5352	0.70	-0.2
6,102,489	+		PP_5352	0.75	-0.1
6,102,490	-		PP_5352	0.75	+0.1
6,102,562	+		PP_5352	0.78	+0.1
6,102,562	+		PP_5352	0.78	+0.0
6,102,562	+		PP_5352	0.78	-1.3
6,102,562	+		PP_5352	0.78	-0.1
6,102,562	+		PP_5352	0.78	-1.1
6,102,563	-		PP_5352	0.78	+0.7
6,102,563	-		PP_5352	0.78	+0.3
6,102,563	-		PP_5352	0.78	+0.4
6,102,563	-		PP_5352	0.78	-1.8
6,102,563	-		PP_5352	0.78	+0.6
6,102,655	+		PP_5352	0.83	+0.4
6,102,655	+		PP_5352	0.83	+0.3
6,102,655	+		PP_5352	0.83	+1.3
6,102,655	+		PP_5352	0.83	-1.8
6,102,655	+		PP_5352	0.83	-1.9
6,102,655	+		PP_5352	0.83	-1.4
6,102,656	-		PP_5352	0.83	+0.4
6,102,656	-		PP_5352	0.83	+0.2
6,102,656	-		PP_5352	0.83	-0.4
6,102,656	-		PP_5352	0.83	-1.1
6,102,656	-		PP_5352	0.83	-1.2
6,102,656	-		PP_5352	0.83	-0.7
6,102,656	-		PP_5352	0.83	+0.4
6,102,656	-		PP_5352	0.83	+0.9
6,102,659	+		PP_5352	0.83	-1.9
6,102,659	+		PP_5352	0.83	-0.2
6,102,659	+		PP_5352	0.83	-3.0
6,102,659	+		PP_5352	0.83	-0.2
6,102,659	+		PP_5352	0.83	-1.3
6,102,659	+		PP_5352	0.83	+0.3
6,102,660	-		PP_5352	0.83	-0.8
6,102,660	-		PP_5352	0.83	-1.1
6,102,660	-		PP_5352	0.83	-0.4
6,102,660	-		PP_5352	0.83	+0.9
6,102,660	-		PP_5352	0.83	+0.1
6,102,660	-		PP_5352	0.83	+1.9
6,102,660	-		PP_5352	0.83	-2.0
6,102,660	-		PP_5352	0.83	-0.1
6,102,660	-		PP_5352	0.83	+0.1
6,102,660	-		PP_5352	0.83	-0.9
6,102,660	-		PP_5352	0.83	-0.5
6,102,697	+		PP_5352	0.84	-2.4
6,102,697	+		PP_5352	0.84	-0.1
6,102,697	+		PP_5352	0.84	-0.7
6,102,698	-		PP_5352	0.85	-0.7
6,102,698	-		PP_5352	0.85	-1.1
6,102,718	+		PP_5352	0.85	-1.7
6,102,733	+		PP_5352	0.86	+0.3
6,102,734	-		PP_5352	0.86	+0.3
6,102,788	+		PP_5352	0.89	-0.3
6,102,788	+		PP_5352	0.89	-1.1
6,102,788	+		PP_5352	0.89	+2.2
6,102,788	+		PP_5352	0.89	+0.4
6,102,788	+		PP_5352	0.89	+0.3
6,102,789	-		PP_5352	0.89	-0.5
6,102,789	-		PP_5352	0.89	+0.8
6,102,789	-		PP_5352	0.89	+0.4
6,102,914	+				-0.7
6,102,990	+				+0.8
6,102,990	+				+1.9
6,103,033	+				-0.9
6,103,066	+				-2.5
6,103,067	-				-0.2
6,103,093	+				-0.1
6,103,093	+				-0.0
6,103,094	-				-0.3
6,103,094	-				-0.3
6,103,094	-				-0.9
6,103,167	+				-0.6
6,103,167	+				-0.9
6,103,167	+				+0.0
6,103,167	+				-0.4
6,103,167	+				+1.5
6,103,167	+				+0.5
6,103,167	+				+0.9
6,103,168	-				+0.1
6,103,168	-				+0.6
6,103,168	-				-0.4
6,103,168	-				-0.6
6,103,168	-				+0.9
6,103,168	-				+0.4
6,103,168	-				-0.6
6,103,168	-				-0.4
6,103,168	-				-0.7
6,103,168	-				-0.1
6,103,168	-				-0.6
6,103,168	-				-0.2
6,103,168	-				-0.9
6,103,168	-				+0.6
6,103,182	+				-0.8
6,103,276	-		PP_5353	0.13	+0.8
6,103,328	+		PP_5353	0.19	-0.1
6,103,821	+		PP_5353	0.76	+0.6
6,103,821	+		PP_5353	0.76	-0.2
6,103,821	+		PP_5353	0.76	-0.3
6,103,821	+		PP_5353	0.76	+0.3
6,103,821	+		PP_5353	0.76	+2.3
6,103,821	+		PP_5353	0.76	-0.0
6,103,821	+		PP_5353	0.76	-1.3
6,103,822	-		PP_5353	0.76	-0.1
6,103,822	-		PP_5353	0.76	+0.8
6,103,825	+		PP_5353	0.77	+1.1
6,103,825	+		PP_5353	0.77	-0.9
6,103,825	+		PP_5353	0.77	-0.8
6,103,826	-		PP_5353	0.77	-2.2
6,103,826	-		PP_5353	0.77	-0.6
6,104,020	+				+0.1
6,104,034	+				-1.3
6,104,034	+				+0.4
6,104,034	+				-0.5
6,104,035	-				+1.6