Strain Fitness in Pseudomonas putida KT2440 around PP_5001

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
5,696,511	-				-2.0
5,696,511	-				-1.2
5,696,513	-				+0.8
5,696,550	+				-0.5
5,696,550	+				+0.1
5,696,550	+				+0.3
5,696,551	-				-0.5
5,696,559	+				-1.7
5,696,609	+				+0.3
5,696,609	+				-0.8
5,696,649	+				+1.5
5,696,649	+				-0.2
5,696,650	-				+0.2
5,696,650	-				+0.2
5,696,650	-				+0.5
5,696,650	-				+0.4
5,696,711	+				-1.0
5,696,711	+				-1.4
5,696,712	-				+0.9
5,696,712	-				+0.5
5,697,012	-		PP_5000	0.47	+0.6
5,697,145	-		PP_5000	0.73	+0.5
5,697,360	-				-0.7
5,697,360	-				+0.9
5,697,634	+		PP_5001	0.20	+0.7
5,697,634	+				+1.8
5,697,635	-		PP_5001	0.20	-1.8
5,697,843	-		PP_5001	0.35	-0.8
5,697,843	-		PP_5001	0.35	-2.7
5,698,429	+		PP_5001	0.79	-0.4
5,698,648	+				-0.3
5,698,649	-				-0.3
5,698,700	-				-0.1
5,698,834	-				-0.4
5,698,834	-				+0.3
5,698,834	-				+0.6
5,698,834	-				-0.0
5,698,937	+		PP_5002	0.16	+0.2
5,699,138	+		PP_5002	0.69	+2.2
5,699,139	-		PP_5002	0.69	+0.5
5,699,344	+				+0.9
5,699,344	+				+0.2
5,699,345	-				-0.4
5,699,431	+				+1.1
5,699,449	+				-2.4
5,699,449	+				-0.1
5,699,449	+				+0.7
5,699,493	+				+0.4
5,699,521	-				+0.6
5,699,521	-				-0.0
5,699,528	+				-0.4
5,699,528	+				-0.2
5,699,528	+				-1.5
5,699,529	-				+0.0
5,699,529	-				-0.2
5,699,548	+				+0.6
5,699,548	+				+0.4
5,699,548	+				-0.6
5,699,549	-				-0.4