Experiment: Cholinium lysinate 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4829 and PP_4830 are separated by 243 nucleotides PP_4830 and PP_4831 overlap by 8 nucleotides
PP_4829: PP_4829 - putative precorrin-3B synthase, at 5,495,353 to 5,496,684
_4829
PP_4830: PP_4830 - precorrin-6Y C(5,15)-methyltransferase, at 5,496,928 to 5,498,139
_4830
PP_4831: PP_4831 - putative cobalt-precorrin-6A synthase, at 5,498,132 to 5,499,226
_4831
Position (kb) 5496
5497
5498
5499 Strain fitness (log2 ratio) -2
-1
0
1 at 5495.996 kb on + strand, within PP_4829 at 5495.996 kb on + strand, within PP_4829 at 5496.583 kb on - strand at 5496.583 kb on - strand at 5496.707 kb on + strand at 5496.708 kb on - strand at 5496.708 kb on - strand at 5496.722 kb on + strand at 5496.722 kb on + strand at 5496.722 kb on + strand at 5496.723 kb on - strand at 5496.723 kb on - strand at 5496.723 kb on - strand at 5496.723 kb on - strand at 5496.781 kb on + strand at 5496.781 kb on + strand at 5496.861 kb on + strand at 5496.862 kb on - strand at 5496.868 kb on - strand at 5496.926 kb on - strand at 5496.926 kb on - strand at 5496.947 kb on + strand at 5496.947 kb on + strand at 5496.947 kb on + strand at 5496.948 kb on - strand at 5496.948 kb on - strand at 5496.950 kb on + strand at 5496.950 kb on + strand at 5496.951 kb on - strand at 5496.951 kb on - strand at 5496.951 kb on - strand at 5497.160 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.169 kb on - strand, within PP_4830 at 5497.549 kb on - strand, within PP_4830 at 5497.601 kb on - strand, within PP_4830 at 5497.817 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5498.118 kb on - strand at 5498.119 kb on - strand at 5498.179 kb on + strand at 5498.179 kb on + strand at 5498.180 kb on - strand at 5498.180 kb on - strand at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.391 kb on - strand, within PP_4831 at 5498.392 kb on + strand, within PP_4831 at 5498.705 kb on + strand, within PP_4831 at 5498.706 kb on - strand, within PP_4831 at 5498.706 kb on - strand, within PP_4831 at 5498.753 kb on + strand, within PP_4831 at 5498.754 kb on - strand, within PP_4831 at 5498.763 kb on + strand, within PP_4831 at 5498.764 kb on - strand, within PP_4831 at 5498.764 kb on - strand, within PP_4831 at 5498.811 kb on - strand, within PP_4831
Per-strain Table
Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol% remove 5,495,996 + PP_4829 0.48 -1.3 5,495,996 + PP_4829 0.48 -0.5 5,496,583 - -0.6 5,496,583 - -1.9 5,496,707 + -0.4 5,496,708 - +0.8 5,496,708 - +0.2 5,496,722 + -2.5 5,496,722 + -0.4 5,496,722 + -1.4 5,496,723 - +1.1 5,496,723 - -0.5 5,496,723 - +0.6 5,496,723 - -1.6 5,496,781 + -0.9 5,496,781 + +0.6 5,496,861 + -1.0 5,496,862 - -0.9 5,496,868 - -1.8 5,496,926 - +0.1 5,496,926 - -0.4 5,496,947 + -0.5 5,496,947 + -0.9 5,496,947 + -0.4 5,496,948 - -1.6 5,496,948 - +0.4 5,496,950 + -1.8 5,496,950 + -0.8 5,496,951 - -0.3 5,496,951 - +0.1 5,496,951 - -0.7 5,497,160 + PP_4830 0.19 -2.1 5,497,161 + PP_4830 0.19 -1.0 5,497,161 + PP_4830 0.19 -0.8 5,497,161 + PP_4830 0.19 -0.8 5,497,162 - PP_4830 0.19 -1.1 5,497,162 - PP_4830 0.19 -1.5 5,497,162 - PP_4830 0.19 -0.3 5,497,162 - PP_4830 0.19 -1.8 5,497,169 - PP_4830 0.20 -1.2 5,497,549 - PP_4830 0.51 +0.2 5,497,601 - PP_4830 0.56 +1.0 5,497,817 + PP_4830 0.73 +0.4 5,497,919 + PP_4830 0.82 -0.7 5,497,919 + PP_4830 0.82 -0.8 5,497,919 + PP_4830 0.82 +0.3 5,497,919 + PP_4830 0.82 +0.7 5,498,118 - -0.2 5,498,119 - -0.1 5,498,179 + -1.2 5,498,179 + -0.6 5,498,180 - +1.0 5,498,180 - -0.6 5,498,390 + PP_4831 0.24 +0.1 5,498,390 + PP_4831 0.24 +0.1 5,498,390 + PP_4831 0.24 +0.4 5,498,390 + PP_4831 0.24 -0.7 5,498,391 - PP_4831 0.24 +0.5 5,498,392 + PP_4831 0.24 +0.2 5,498,705 + PP_4831 0.52 +1.1 5,498,706 - PP_4831 0.52 -0.6 5,498,706 - PP_4831 0.52 -0.2 5,498,753 + PP_4831 0.57 -0.1 5,498,754 - PP_4831 0.57 -1.1 5,498,763 + PP_4831 0.58 -0.1 5,498,764 - PP_4831 0.58 -0.9 5,498,764 - PP_4831 0.58 +0.4 5,498,811 - PP_4831 0.62 +1.2
Or see this region's nucleotide sequence