Strain Fitness in Pseudomonas putida KT2440 around PP_4660

Experiment: Cholinium lysinate 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4659 and PP_4660 are separated by 117 nucleotidesPP_4660 and PP_4661 are separated by 183 nucleotidesPP_4661 and PP_4662 are separated by 82 nucleotides PP_4659: PP_4659 - gamma-glutamyltranspeptidase, at 5,285,638 to 5,287,305 _4659 PP_4660: PP_4660 - Transcriptional regulator, LysR family, at 5,287,423 to 5,288,319 _4660 PP_4661: PP_4661 - modulator of drug activity B, at 5,288,503 to 5,289,174 _4661 PP_4662: PP_4662 - conserved protein of unknown function, at 5,289,257 to 5,289,571 _4662 Position (kb) 5287 5288 5289Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5286.426 kb on + strand, within PP_4659at 5286.427 kb on - strand, within PP_4659at 5286.519 kb on + strand, within PP_4659at 5286.520 kb on - strand, within PP_4659at 5286.521 kb on + strand, within PP_4659at 5286.521 kb on + strand, within PP_4659at 5286.521 kb on + strand, within PP_4659at 5286.522 kb on - strand, within PP_4659at 5286.522 kb on - strand, within PP_4659at 5286.575 kb on + strand, within PP_4659at 5286.575 kb on + strand, within PP_4659at 5286.576 kb on - strand, within PP_4659at 5286.598 kb on - strand, within PP_4659at 5286.656 kb on + strand, within PP_4659at 5286.657 kb on - strand, within PP_4659at 5286.657 kb on - strand, within PP_4659at 5286.657 kb on - strand, within PP_4659at 5286.657 kb on - strand, within PP_4659at 5286.684 kb on + strand, within PP_4659at 5286.684 kb on + strand, within PP_4659at 5286.684 kb on + strand, within PP_4659at 5286.684 kb on + strand, within PP_4659at 5286.684 kb on + strand, within PP_4659at 5286.684 kb on + strand, within PP_4659at 5286.685 kb on - strandat 5286.685 kb on - strand, within PP_4659at 5286.685 kb on - strand, within PP_4659at 5286.685 kb on - strand, within PP_4659at 5286.992 kb on + strand, within PP_4659at 5286.992 kb on + strand, within PP_4659at 5286.992 kb on + strand, within PP_4659at 5286.992 kb on + strand, within PP_4659at 5286.992 kb on + strand, within PP_4659at 5286.993 kb on - strand, within PP_4659at 5286.993 kb on - strand, within PP_4659at 5286.993 kb on - strand, within PP_4659at 5287.031 kb on + strand, within PP_4659at 5287.043 kb on + strand, within PP_4659at 5287.043 kb on + strand, within PP_4659at 5287.043 kb on + strand, within PP_4659at 5287.044 kb on - strand, within PP_4659at 5287.089 kb on + strand, within PP_4659at 5287.092 kb on + strand, within PP_4659at 5287.093 kb on - strand, within PP_4659at 5287.106 kb on + strand, within PP_4659at 5287.196 kb on + strandat 5287.196 kb on + strandat 5287.197 kb on - strandat 5287.197 kb on - strandat 5287.284 kb on - strandat 5287.299 kb on + strandat 5287.299 kb on + strandat 5287.299 kb on + strandat 5287.342 kb on + strandat 5287.433 kb on + strandat 5287.434 kb on - strandat 5287.434 kb on - strandat 5287.505 kb on + strandat 5287.506 kb on - strandat 5287.506 kb on - strandat 5287.506 kb on - strandat 5287.506 kb on - strandat 5287.506 kb on - strandat 5287.530 kb on - strand, within PP_4660at 5288.126 kb on + strand, within PP_4660at 5288.143 kb on - strand, within PP_4660at 5288.143 kb on - strand, within PP_4660at 5288.291 kb on - strandat 5288.351 kb on + strandat 5288.351 kb on + strandat 5288.355 kb on + strandat 5288.355 kb on + strandat 5288.390 kb on + strandat 5288.390 kb on + strandat 5288.391 kb on - strandat 5288.391 kb on - strandat 5288.427 kb on - strandat 5288.427 kb on - strandat 5288.451 kb on + strandat 5288.451 kb on + strandat 5288.451 kb on + strandat 5288.452 kb on - strandat 5288.452 kb on - strandat 5288.454 kb on + strandat 5288.498 kb on + strandat 5288.498 kb on + strandat 5288.499 kb on - strandat 5288.543 kb on + strandat 5288.543 kb on + strandat 5288.543 kb on + strandat 5288.543 kb on + strandat 5288.544 kb on - strandat 5288.544 kb on - strandat 5288.544 kb on - strandat 5288.544 kb on - strandat 5288.544 kb on - strandat 5288.651 kb on + strand, within PP_4661at 5288.651 kb on + strand, within PP_4661at 5288.652 kb on - strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strandat 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.772 kb on - strand, within PP_4661at 5288.796 kb on + strand, within PP_4661at 5288.813 kb on + strand, within PP_4661at 5288.814 kb on - strand, within PP_4661at 5288.814 kb on - strand, within PP_4661at 5288.814 kb on - strand, within PP_4661at 5288.853 kb on - strand, within PP_4661at 5288.853 kb on - strand, within PP_4661at 5288.853 kb on - strand, within PP_4661at 5288.900 kb on + strand, within PP_4661at 5288.900 kb on + strand, within PP_4661at 5288.901 kb on - strand, within PP_4661at 5288.901 kb on - strand, within PP_4661at 5288.951 kb on + strand, within PP_4661at 5288.952 kb on - strand, within PP_4661at 5289.063 kb on + strand, within PP_4661at 5289.136 kb on - strandat 5289.136 kb on - strandat 5289.156 kb on + strandat 5289.178 kb on - strandat 5289.208 kb on - strandat 5289.208 kb on - strandat 5289.248 kb on + strandat 5289.277 kb on + strandat 5289.278 kb on - strandat 5289.278 kb on - strandat 5289.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholinium lysinate 10 vol%
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5,286,426 + PP_4659 0.47 +0.5
5,286,427 - PP_4659 0.47 -2.1
5,286,519 + PP_4659 0.53 +0.6
5,286,520 - PP_4659 0.53 +0.6
5,286,521 + PP_4659 0.53 -0.4
5,286,521 + PP_4659 0.53 -0.1
5,286,521 + PP_4659 0.53 -0.7
5,286,522 - PP_4659 0.53 +0.9
5,286,522 - PP_4659 0.53 -0.4
5,286,575 + PP_4659 0.56 +0.3
5,286,575 + PP_4659 0.56 -0.6
5,286,576 - PP_4659 0.56 -1.1
5,286,598 - PP_4659 0.58 -0.2
5,286,656 + PP_4659 0.61 +0.1
5,286,657 - PP_4659 0.61 +0.2
5,286,657 - PP_4659 0.61 -0.5
5,286,657 - PP_4659 0.61 +0.5
5,286,657 - PP_4659 0.61 -0.4
5,286,684 + PP_4659 0.63 -1.3
5,286,684 + PP_4659 0.63 +0.4
5,286,684 + PP_4659 0.63 -0.1
5,286,684 + PP_4659 0.63 +0.8
5,286,684 + PP_4659 0.63 -0.3
5,286,684 + PP_4659 0.63 -0.1
5,286,685 - +3.2
5,286,685 - PP_4659 0.63 +0.2
5,286,685 - PP_4659 0.63 +0.4
5,286,685 - PP_4659 0.63 +0.5
5,286,992 + PP_4659 0.81 -0.2
5,286,992 + PP_4659 0.81 +0.4
5,286,992 + PP_4659 0.81 +0.0
5,286,992 + PP_4659 0.81 +0.3
5,286,992 + PP_4659 0.81 +0.7
5,286,993 - PP_4659 0.81 -1.6
5,286,993 - PP_4659 0.81 +0.4
5,286,993 - PP_4659 0.81 +0.1
5,287,031 + PP_4659 0.84 +0.4
5,287,043 + PP_4659 0.84 -0.6
5,287,043 + PP_4659 0.84 -1.1
5,287,043 + PP_4659 0.84 -1.6
5,287,044 - PP_4659 0.84 -0.0
5,287,089 + PP_4659 0.87 +1.2
5,287,092 + PP_4659 0.87 +0.3
5,287,093 - PP_4659 0.87 -0.8
5,287,106 + PP_4659 0.88 +0.3
5,287,196 + -0.3
5,287,196 + -0.9
5,287,197 - +0.4
5,287,197 - +0.2
5,287,284 - -0.2
5,287,299 + +0.6
5,287,299 + -2.1
5,287,299 + -0.6
5,287,342 + -0.9
5,287,433 + -0.7
5,287,434 - +0.5
5,287,434 - -0.8
5,287,505 + -0.4
5,287,506 - -0.3
5,287,506 - +0.2
5,287,506 - +1.4
5,287,506 - +0.5
5,287,506 - +0.5
5,287,530 - PP_4660 0.12 -0.7
5,288,126 + PP_4660 0.78 -0.9
5,288,143 - PP_4660 0.80 -0.3
5,288,143 - PP_4660 0.80 -0.2
5,288,291 - +0.1
5,288,351 + +0.5
5,288,351 + -0.1
5,288,355 + +0.4
5,288,355 + -1.6
5,288,390 + +0.5
5,288,390 + +0.0
5,288,391 - -1.4
5,288,391 - -0.2
5,288,427 - -0.4
5,288,427 - -0.4
5,288,451 + -0.9
5,288,451 + -0.8
5,288,451 + -0.0
5,288,452 - +0.2
5,288,452 - +0.7
5,288,454 + +1.7
5,288,498 + +0.4
5,288,498 + -0.8
5,288,499 - -0.4
5,288,543 + +0.6
5,288,543 + +0.2
5,288,543 + -0.0
5,288,543 + +0.4
5,288,544 - -0.3
5,288,544 - +0.1
5,288,544 - +0.4
5,288,544 - +1.5
5,288,544 - +0.5
5,288,651 + PP_4661 0.22 -0.2
5,288,651 + PP_4661 0.22 +0.1
5,288,652 - PP_4661 0.22 -0.6
5,288,738 + PP_4661 0.35 -0.6
5,288,738 + PP_4661 0.35 -0.0
5,288,738 + PP_4661 0.35 -0.7
5,288,738 + PP_4661 0.35 +0.1
5,288,738 + PP_4661 0.35 -0.6
5,288,739 - PP_4661 0.35 +0.9
5,288,739 - PP_4661 0.35 +0.1
5,288,739 - PP_4661 0.35 +0.2
5,288,739 - +0.1
5,288,739 - PP_4661 0.35 +0.0
5,288,739 - PP_4661 0.35 +0.2
5,288,772 - PP_4661 0.40 -0.7
5,288,796 + PP_4661 0.44 +0.3
5,288,813 + PP_4661 0.46 +0.9
5,288,814 - PP_4661 0.46 +0.1
5,288,814 - PP_4661 0.46 +0.9
5,288,814 - PP_4661 0.46 -0.8
5,288,853 - PP_4661 0.52 -0.3
5,288,853 - PP_4661 0.52 -0.2
5,288,853 - PP_4661 0.52 +0.0
5,288,900 + PP_4661 0.59 +1.2
5,288,900 + PP_4661 0.59 +0.4
5,288,901 - PP_4661 0.59 +0.4
5,288,901 - PP_4661 0.59 +1.1
5,288,951 + PP_4661 0.67 +1.0
5,288,952 - PP_4661 0.67 +0.1
5,289,063 + PP_4661 0.83 -0.2
5,289,136 - +0.4
5,289,136 - -0.4
5,289,156 + -1.6
5,289,178 - -0.7
5,289,208 - +0.2
5,289,208 - -0.1
5,289,248 + +0.1
5,289,277 + -0.1
5,289,278 - -0.6
5,289,278 - -0.2
5,289,278 - +0.7

Or see this region's nucleotide sequence