Strain Fitness in Pseudomonas putida KT2440 around PP_4561

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
5,181,170	+		PP_4560	0.19	-0.4
5,181,171	-		PP_4560	0.19	-1.0
5,181,176	+				+0.0
5,181,176	+		PP_4560	0.20	-0.7
5,181,176	+		PP_4560	0.20	+0.9
5,181,177	-		PP_4560	0.20	-1.2
5,181,177	-				-0.4
5,181,177	-		PP_4560	0.20	-0.4
5,181,212	+		PP_4560	0.24	+1.6
5,181,212	+		PP_4560	0.24	+0.0
5,181,224	+		PP_4560	0.25	+1.6
5,181,245	+		PP_4560	0.27	+0.0
5,181,245	+		PP_4560	0.27	+1.6
5,181,248	+		PP_4560	0.27	+1.4
5,181,344	+		PP_4560	0.37	+1.6
5,181,344	+		PP_4560	0.37	-1.1
5,181,344	+		PP_4560	0.37	+0.8
5,181,347	+		PP_4560	0.38	+0.0
5,181,347	+		PP_4560	0.38	+0.0
5,181,347	+		PP_4560	0.38	+0.0
5,181,348	-		PP_4560	0.38	+0.4
5,181,348	-		PP_4560	0.38	-0.7
5,181,348	-		PP_4560	0.38	-1.0
5,181,348	-		PP_4560	0.38	+1.3
5,181,348	-		PP_4560	0.38	+0.2
5,181,348	-		PP_4560	0.38	-1.2
5,181,525	-		PP_4560	0.56	-0.7
5,181,525	-		PP_4560	0.56	-1.0
5,181,578	+		PP_4560	0.62	+0.8
5,181,579	-		PP_4560	0.62	-0.4
5,181,645	+		PP_4560	0.69	+0.5
5,181,836	+		PP_4560	0.89	+0.0
5,181,854	+				+0.6
5,181,855	-				+0.4
5,181,855	-				-1.2
5,181,855	-				-0.4
5,181,855	-				-1.0
5,181,942	+				+1.0
5,181,969	+				+0.6
5,181,969	+				+0.5
5,181,983	+				-0.5
5,181,983	+				-0.2
5,181,984	-				-0.2
5,181,984	-				+0.4
5,181,984	-				-1.4
5,181,986	+				+0.1
5,181,986	+				+0.2
5,181,987	-				-1.8
5,182,042	+				+2.6
5,182,042	+				+0.1
5,182,042	+				-0.1
5,182,043	-				+1.1
5,182,043	-				-0.9
5,182,187	+		PP_4561	0.51	-1.2
5,182,263	+				-0.0
5,182,264	-				+0.6
5,182,264	-				-1.3
5,182,381	-				+0.7
5,182,487	+				+0.3
5,182,487	+				-0.9
5,182,488	-				+0.1
5,182,881	+				+0.6
5,182,882	-				-0.2
5,182,890	-				-0.9
5,182,890	-				-0.7