Strain Fitness in Pseudomonas putida KT2440 around PP_3679

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
4,180,696	-		PP_3678	0.38	-0.3
4,180,723	+		PP_3678	0.40	+0.1
4,180,723	+		PP_3678	0.40	+1.2
4,180,800	-		PP_3678	0.45	+0.4
4,180,819	-		PP_3678	0.47	-1.5
4,180,939	-		PP_3678	0.55	-0.5
4,181,046	+		PP_3678	0.62	-1.1
4,181,101	-		PP_3678	0.66	-0.8
4,181,273	-		PP_3678	0.78	+0.8
4,181,387	+		PP_3678	0.85	-0.0
4,181,402	+		PP_3678	0.86	+0.5
4,181,404	+		PP_3678	0.87	+0.1
4,181,426	-		PP_3678	0.88	+0.0
4,181,430	-		PP_3678	0.88	-0.4
4,181,438	-		PP_3678	0.89	-1.4
4,181,444	-		PP_3678	0.89	-0.2
4,181,479	+				-0.6
4,181,480	-				-0.2
4,181,491	-				+0.3
4,181,536	+				-0.8
4,181,545	+				-0.4
4,181,545	+				-0.3
4,181,671	+				+0.1
4,181,698	+		PP_3679	0.11	-0.3
4,181,699	-		PP_3679	0.11	-0.8
4,181,699	-		PP_3679	0.11	-0.5
4,181,819	+		PP_3679	0.48	+0.7
4,181,882	+		PP_3679	0.68	-2.0
4,181,882	+		PP_3679	0.68	-1.2
4,181,882	+		PP_3679	0.68	+1.2
4,181,885	+		PP_3679	0.69	-0.3
4,181,886	-		PP_3679	0.69	-0.4
4,181,923	+		PP_3679	0.81	-2.9
4,181,924	-		PP_3679	0.81	-0.6
4,182,020	+				+0.2
4,182,020	+				-0.3
4,182,021	-				-0.5
4,182,021	-				+0.6
4,182,024	+				+0.1
4,182,024	+				-1.7
4,182,024	+				+0.7
4,182,025	-				-0.3
4,182,025	-				-1.4
4,182,025	-				+0.1
4,182,026	+				+0.0
4,182,027	-				+0.3
4,182,027	-				-0.1
4,182,041	+				-0.2
4,182,042	-				-0.3
4,182,054	+				-0.3
4,182,055	-				+0.2
4,182,059	-				-0.5
4,182,061	+				-0.1
4,182,061	+				-0.3
4,182,062	-				-0.7
4,182,112	+				+0.1
4,182,136	+				-0.1
4,182,136	+				-2.1
4,182,137	-				-0.4
4,182,183	-				-0.3
4,182,183	-				+0.3
4,182,207	-				+0.2
4,182,207	-				-0.2
4,182,207	-				+1.1
4,182,241	+				-0.1
4,182,242	-				-1.4
4,182,356	+				-0.1
4,182,356	+				-0.7
4,182,357	-				-0.0
4,182,357	-				-1.4
4,182,357	-				-0.5
4,182,372	+				+1.1
4,182,372	+				+0.6
4,182,372	+				-0.1
4,182,372	+				-0.1
4,182,372	+				+0.8
4,182,373	-				+1.4
4,182,373	-				-0.2
4,182,373	-				-0.4
4,182,373	-				+0.0
4,182,373	-				-0.3
4,182,373	-				-0.8
4,182,376	+				+0.0
4,182,376	+				+0.7
4,182,376	+				+0.4
4,182,377	-				-1.3
4,182,377	-				-0.2
4,182,377	-				+0.2
4,182,383	+				-0.2
4,182,384	-				+1.1
4,182,658	-		PP_3680	0.22	+0.4
4,182,658	-		PP_3680	0.22	+1.4
4,182,658	-		PP_3680	0.22	+0.3
4,182,680	+		PP_3680	0.23	-1.1
4,182,692	+		PP_3680	0.23	-1.0
4,182,692	+		PP_3680	0.23	-0.6
4,182,692	+		PP_3680	0.23	+0.1
4,182,692	+		PP_3680	0.23	-0.5
4,182,692	+		PP_3680	0.23	+1.0
4,182,693	-		PP_3680	0.23	-0.1
4,182,697	+		PP_3680	0.24	-0.3
4,182,697	+		PP_3680	0.24	-0.3
4,182,698	-		PP_3680	0.24	+0.2
4,182,698	-		PP_3680	0.24	-0.8
4,182,729	+				+0.4
4,182,770	+		PP_3680	0.27	+0.4
4,182,770	+		PP_3680	0.27	-0.4
4,182,770	+		PP_3680	0.27	-0.4
4,182,770	+		PP_3680	0.27	+0.2
4,182,770	+		PP_3680	0.27	+0.3
4,182,771	-		PP_3680	0.27	+0.9
4,182,771	-		PP_3680	0.27	-0.4
4,182,771	-		PP_3680	0.27	+1.5
4,182,771	-		PP_3680	0.27	-0.4
4,182,771	-		PP_3680	0.27	-1.0
4,182,771	-		PP_3680	0.27	+0.8
4,182,781	+		PP_3680	0.28	-0.2
4,182,782	-		PP_3680	0.28	+0.5
4,182,782	-		PP_3680	0.28	-1.0
4,182,782	-		PP_3680	0.28	+0.5
4,182,785	+		PP_3680	0.28	-1.2
4,182,785	+		PP_3680	0.28	+0.4
4,182,814	-		PP_3680	0.29	-0.6
4,182,839	+		PP_3680	0.31	-0.7
4,182,839	+		PP_3680	0.31	+0.2
4,182,946	+		PP_3680	0.36	-1.2