Strain Fitness in Pseudomonas putida KT2440 around PP_3512

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
3,983,357	-		PP_3511	0.36	+0.3
3,983,452	+		PP_3511	0.46	-0.4
3,983,548	+		PP_3511	0.55	+1.0
3,983,548	+		PP_3511	0.55	-0.3
3,983,548	+		PP_3511	0.55	-1.5
3,983,549	-		PP_3511	0.55	+0.3
3,983,549	-		PP_3511	0.55	-0.2
3,983,608	+		PP_3511	0.61	+0.6
3,983,609	-		PP_3511	0.61	+0.1
3,983,873	-		PP_3511	0.87	+0.6
3,983,936	-				+1.3
3,983,970	-				-0.3
3,983,970	-				+0.1
3,983,970	-				-1.3
3,984,020	+				-0.4
3,984,071	-				+0.1
3,984,071	-				-0.7
3,984,085	+				-2.1
3,984,086	-				+1.0
3,984,107	+				-0.3
3,984,129	-				+0.3
3,984,129	-				+1.0
3,984,251	+		PP_3512	0.12	-0.9
3,984,263	+		PP_3512	0.15	+0.1
3,984,399	+		PP_3512	0.46	-1.2
3,984,399	+		PP_3512	0.46	-0.4
3,984,448	+		PP_3512	0.57	+0.3
3,984,449	-		PP_3512	0.57	-2.2
3,984,449	-		PP_3512	0.57	-0.5
3,984,695	+				-0.5
3,985,024	-		PP_3513	0.36	+0.8
3,985,024	-		PP_3513	0.36	+0.5
3,985,024	-		PP_3513	0.36	+0.2
3,985,024	-		PP_3513	0.36	-0.1
3,985,031	-		PP_3513	0.37	-0.2
3,985,117	+		PP_3513	0.47	-0.0
3,985,117	+		PP_3513	0.47	+0.3
3,985,118	-		PP_3513	0.47	+0.8
3,985,118	-		PP_3513	0.47	+0.1
3,985,118	-		PP_3513	0.47	+1.0
3,985,230	+		PP_3513	0.60	-0.6
3,985,231	-		PP_3513	0.60	+0.0
3,985,231	-		PP_3513	0.60	-0.7
3,985,305	+		PP_3513	0.69	+0.9
3,985,305	+		PP_3513	0.69	+0.2
3,985,305	+		PP_3513	0.69	-0.5
3,985,305	+		PP_3513	0.69	+1.8
3,985,305	+		PP_3513	0.69	+0.5
3,985,305	+		PP_3513	0.69	+0.1
3,985,306	-		PP_3513	0.69	+0.5
3,985,306	-		PP_3513	0.69	-0.5
3,985,306	-		PP_3513	0.69	+0.5
3,985,306	-		PP_3513	0.69	+0.4
3,985,306	-		PP_3513	0.69	+0.5
3,985,306	-		PP_3513	0.69	+0.5
3,985,306	-		PP_3513	0.69	-0.1
3,985,306	-		PP_3513	0.69	-0.2
3,985,307	+		PP_3513	0.69	+0.3
3,985,317	+		PP_3513	0.70	-0.4
3,985,317	+		PP_3513	0.70	-2.1
3,985,317	+		PP_3513	0.70	-0.6
3,985,318	-				+0.3
3,985,318	-		PP_3513	0.70	-0.6
3,985,318	-		PP_3513	0.70	-0.8
3,985,318	-		PP_3513	0.70	+0.5
3,985,369	-		PP_3513	0.76	+0.6
3,985,433	-		PP_3513	0.84	-1.1
3,985,493	+				+0.3
3,985,569	+				-0.7
3,985,569	+				+0.1
3,985,569	+				-0.4
3,985,570	-				-0.5