Strain Fitness in Pseudomonas putida KT2440 around PP_3497

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
3,964,813	+		PP_3495	0.62	-0.4
3,964,862	+		PP_3495	0.69	+0.3
3,964,952	+		PP_3495	0.82	+0.1
3,965,027	+				-0.2
3,965,027	+				+0.8
3,965,028	-				+0.4
3,965,028	-				+0.2
3,965,028	-				-0.0
3,965,028	-				+1.2
3,965,028	-				+0.3
3,965,028	-				+0.2
3,965,080	+				-0.4
3,965,080	+				-0.9
3,965,081	-				-1.6
3,965,235	+				+0.0
3,965,235	+				-0.4
3,965,236	-		PP_3496	0.10	+0.4
3,965,236	-		PP_3496	0.10	+0.8
3,965,442	+		PP_3496	0.62	+0.5
3,965,442	+		PP_3496	0.62	-1.2
3,965,442	+		PP_3496	0.62	+0.2
3,965,443	-		PP_3496	0.62	-0.7
3,965,443	-		PP_3496	0.62	+1.1
3,965,485	-		PP_3496	0.72	+0.1
3,965,681	+				-0.9
3,965,765	+				-0.4
3,965,778	+				+0.7
3,965,779	-				-0.4
3,965,800	-				+0.5
3,965,800	-				+0.2
3,965,802	-				-0.3
3,965,901	+				-0.7
3,965,901	+				-0.5
3,965,901	+				-2.5
3,965,902	-				-0.5
3,965,902	-				-0.0
3,965,902	-				+1.0
3,965,902	-				+0.2
3,965,902	-				+0.5
3,965,902	-				+0.6
3,965,988	+				+0.5
3,965,989	-				-0.9
3,965,989	-				+2.0
3,966,072	+		PP_3497	0.13	-0.5
3,966,072	+		PP_3497	0.13	-0.3
3,966,073	-		PP_3497	0.13	+0.6
3,966,073	-		PP_3497	0.13	-0.2
3,966,540	+		PP_3497	0.37	+0.5
3,966,541	-		PP_3497	0.37	-0.3
3,966,555	+		PP_3497	0.37	-0.1
3,966,555	+		PP_3497	0.37	-0.1
3,966,556	-		PP_3497	0.37	-0.4
3,966,556	-		PP_3497	0.37	-0.8
3,966,622	-		PP_3497	0.41	-1.2
3,966,820	+		PP_3497	0.51	-0.0
3,966,821	-		PP_3497	0.51	-0.2
3,966,821	-		PP_3497	0.51	-2.1
3,967,109	+		PP_3497	0.65	+0.4
3,967,168	+		PP_3497	0.68	+0.1
3,967,236	+		PP_3497	0.71	+0.8
3,967,275	+		PP_3497	0.73	-0.4
3,967,276	-		PP_3497	0.73	-0.4
3,967,276	-		PP_3497	0.73	-0.9
3,967,276	-		PP_3497	0.73	-0.2
3,967,432	+		PP_3497	0.81	-0.7
3,967,432	+		PP_3497	0.81	-1.0
3,967,432	+		PP_3497	0.81	+0.1
3,967,433	-		PP_3497	0.81	-0.7
3,967,433	-		PP_3497	0.81	-0.8
3,967,433	-		PP_3497	0.81	-1.3
3,967,434	+		PP_3497	0.81	-0.5
3,967,434	+				+2.3
3,967,435	-		PP_3497	0.81	+0.1
3,967,494	+		PP_3497	0.84	-0.2
3,967,604	+		PP_3497	0.90	-1.3
3,967,605	-		PP_3497	0.90	-0.1
3,967,646	-				-0.4
3,967,646	-				-0.2
3,967,646	-				-0.1
3,967,760	+				-0.2
3,967,760	+				+0.3
3,967,760	+				+1.3
3,967,760	+				+0.7
3,967,760	+				+0.1
3,967,761	-				+0.1
3,967,868	-				-0.1