Strain Fitness in Pseudomonas putida KT2440 around PP_3116

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
3,525,192	+				-0.2
3,525,192	+				-0.9
3,525,192	+				-0.4
3,525,192	+				-0.1
3,525,422	-				-0.8
3,525,493	-				+0.4
3,525,493	-				+0.9
3,525,493	-				-0.1
3,525,566	+				-0.5
3,525,566	+				+0.0
3,525,567	-				+1.6
3,525,718	-		PP_3116	0.27	-0.5
3,525,751	+		PP_3116	0.32	+0.3
3,525,751	+		PP_3116	0.32	-0.4
3,525,793	+		PP_3116	0.39	-1.6
3,526,086	+		PP_3116	0.87	-1.1
3,526,086	+		PP_3116	0.87	-0.7
3,526,479	+		PP_3117	0.51	-0.0
3,526,479	+		PP_3117	0.51	+0.7
3,526,605	+		PP_3117	0.71	-0.6
3,526,605	+		PP_3117	0.71	-0.5
3,526,761	+				-0.1
3,526,762	-				+0.0
3,527,055	-		PP_3118	0.19	-0.0
3,527,085	-		PP_3118	0.21	+1.8
3,527,085	-		PP_3118	0.21	-1.1