Strain Fitness in Pseudomonas putida KT2440 around PP_3094

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
3,487,208	+		PP_3093	0.40	+0.1
3,487,208	+		PP_3093	0.40	-0.0
3,487,209	-		PP_3093	0.40	+0.8
3,487,244	-		PP_3093	0.43	-0.4
3,487,244	-		PP_3093	0.43	+0.4
3,487,244	-		PP_3093	0.43	-0.0
3,487,244	-		PP_3093	0.43	-0.2
3,487,300	+		PP_3093	0.47	-0.5
3,487,300	+		PP_3093	0.47	+0.1
3,487,300	+		PP_3093	0.47	+0.1
3,487,300	+				+3.8
3,487,300	+				+1.2
3,487,301	-				+0.6
3,487,301	-		PP_3093	0.47	+0.4
3,487,517	+		PP_3093	0.63	+0.1
3,487,549	+		PP_3093	0.66	+0.3
3,487,550	-		PP_3093	0.66	+0.3
3,487,600	-		PP_3093	0.69	+0.6
3,487,670	+		PP_3093	0.75	+0.9
3,487,670	+		PP_3093	0.75	+0.5
3,487,670	+		PP_3093	0.75	-0.1
3,487,671	-		PP_3093	0.75	+0.7
3,487,709	+		PP_3093	0.78	+1.1
3,487,709	+		PP_3093	0.78	-1.7
3,487,709	+		PP_3093	0.78	+0.8
3,487,709	+		PP_3093	0.78	-0.6
3,487,709	+		PP_3093	0.78	-0.1
3,487,710	-		PP_3093	0.78	-0.3
3,487,787	+		PP_3093	0.83	+0.0
3,488,026	-				-0.7
3,488,187	+		PP_3094	0.25	-0.9
3,488,188	-		PP_3094	0.25	-1.2
3,488,261	+		PP_3094	0.35	-0.4
3,488,262	-		PP_3094	0.35	-0.3
3,488,347	+		PP_3094	0.47	-0.6
3,488,956	+				-0.7
3,488,956	+				-0.5
3,488,957	-				+0.5
3,488,957	-				-0.5
3,489,394	+		PP_3095	0.24	-0.8