Strain Fitness in Pseudomonas putida KT2440 around PP_2547

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
2,891,048	+		PP_2545	0.47	-0.7
2,891,216	+		PP_2545	0.68	+0.1
2,891,216	+		PP_2545	0.68	-1.0
2,891,217	-		PP_2545	0.68	-1.1
2,891,217	-		PP_2545	0.68	-0.0
2,891,270	+		PP_2545	0.74	+0.7
2,891,270	+		PP_2545	0.74	+0.3
2,891,270	+		PP_2545	0.74	+0.4
2,891,270	+		PP_2545	0.74	-0.1
2,891,270	+		PP_2545	0.74	-0.9
2,891,270	+		PP_2545	0.74	+0.0
2,891,339	+		PP_2545	0.83	-0.7
2,891,339	+		PP_2545	0.83	-0.5
2,891,387	+		PP_2545	0.89	+0.2
2,891,387	+		PP_2545	0.89	-0.2
2,891,388	-		PP_2545	0.89	-1.0
2,891,503	+				-0.1
2,891,504	-				+0.8
2,891,504	-				-0.8
2,891,504	-				+1.0
2,891,509	+		PP_2546	0.11	-0.3
2,891,510	-		PP_2546	0.11	+0.9
2,891,510	-		PP_2546	0.11	-1.0
2,891,510	-		PP_2546	0.11	+0.8
2,891,582	-		PP_2546	0.30	-0.0
2,891,599	+		PP_2546	0.35	-0.4
2,891,599	+		PP_2546	0.35	-0.1
2,891,599	+		PP_2546	0.35	+0.1
2,891,600	-		PP_2546	0.35	-0.5
2,891,624	-		PP_2546	0.42	+0.1
2,891,834	-				+0.3
2,891,834	-				-1.2
2,891,876	+				+0.9
2,891,877	-				-0.8
2,891,877	-				+1.8
2,891,877	-				-0.1
2,891,877	-				+0.2
2,891,877	-				-1.8
2,891,899	+				-0.1
2,891,900	-				-0.5
2,891,900	-				+0.2
2,892,072	+		PP_2547	0.20	-0.3
2,892,355	+		PP_2547	0.53	-1.0
2,892,627	+		PP_2547	0.84	-1.2
2,892,628	-		PP_2547	0.84	-0.4
2,893,008	+				+0.5
2,893,009	-				-0.5
2,893,077	+				+1.2
2,893,089	+				-0.0
2,893,089	+				+0.7
2,893,090	-				-0.2
2,893,090	-				+0.4
2,893,188	+		PP_2548	0.13	-0.0
2,893,189	-		PP_2548	0.14	+0.2
2,893,200	+		PP_2548	0.14	-0.2
2,893,312	-		PP_2548	0.23	-0.7
2,893,312	-		PP_2548	0.23	-0.6
2,893,312	-		PP_2548	0.23	-1.8
2,893,312	-		PP_2548	0.23	-0.2
2,893,348	+		PP_2548	0.26	-0.0
2,893,348	+		PP_2548	0.26	-0.0
2,893,455	+		PP_2548	0.34	+0.4
2,893,455	+		PP_2548	0.34	+0.0
2,893,455	+		PP_2548	0.34	-1.5
2,893,456	-		PP_2548	0.34	-0.1
2,893,503	+		PP_2548	0.37	+0.3
2,893,504	-		PP_2548	0.37	+0.2
2,893,504	-		PP_2548	0.37	+0.4
2,893,731	+		PP_2548	0.55	+0.2
2,893,731	+		PP_2548	0.55	+0.7
2,893,732	-		PP_2548	0.55	+0.6