Strain Fitness in Pseudomonas putida KT2440 around PP_2360

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
2,691,576	-		PP_2358	0.54	+0.9
2,691,643	-		PP_2358	0.67	+0.2
2,691,710	+		PP_2358	0.79	+1.5
2,691,711	-		PP_2358	0.79	+0.8
2,691,741	+		PP_2358	0.85	+1.5
2,691,742	-		PP_2358	0.85	+0.3
2,691,742	-		PP_2358	0.85	+0.2
2,691,742	-		PP_2358	0.85	-0.6
2,691,742	-		PP_2358	0.85	-0.3
2,691,742	-		PP_2358	0.85	+0.1
2,691,751	+		PP_2358	0.87	+1.4
2,692,100	+		PP_2359	0.49	+1.2
2,692,100	+		PP_2359	0.49	-0.4
2,692,100	+		PP_2359	0.49	+1.2
2,692,105	+		PP_2359	0.50	+0.2
2,692,105	+		PP_2359	0.50	-0.4
2,692,105	+		PP_2359	0.50	+0.1
2,692,106	-		PP_2359	0.50	-0.9
2,692,193	-		PP_2359	0.66	+0.2
2,692,198	-		PP_2359	0.67	-0.6
2,692,198	-		PP_2359	0.67	-0.5
2,692,269	-		PP_2359	0.80	+0.1
2,692,296	+		PP_2359	0.85	+0.8
2,692,338	+				-0.1
2,692,339	-				+0.6
2,692,339	-				-1.3
2,692,339	-				+0.3
2,692,339	-				-0.7
2,692,339	-				+0.4
2,692,339	-				-0.4
2,692,448	+				-0.0
2,692,530	+		PP_2360	0.30	-1.1
2,692,586	+		PP_2360	0.41	+0.1
2,692,587	-		PP_2360	0.42	-0.1
2,692,730	+		PP_2360	0.70	-2.3
2,692,771	-		PP_2360	0.78	-0.7
2,692,845	+				+0.4
2,692,845	+				-0.3
2,692,846	-				+0.5
2,692,961	+				+0.3
2,692,961	+				+0.5
2,692,962	-				+0.1
2,693,129	-		PP_2361	0.28	+0.8
2,693,160	+		PP_2361	0.32	+1.6
2,693,368	+		PP_2361	0.58	-0.6
2,693,477	-		PP_2361	0.72	-0.1
2,693,477	-		PP_2361	0.72	+0.3
2,693,491	-		PP_2361	0.74	-0.6
2,693,504	+		PP_2361	0.76	-0.3
2,693,505	-		PP_2361	0.76	-0.2
2,693,505	-		PP_2361	0.76	-0.1
2,693,505	-		PP_2361	0.76	+0.4
2,693,578	+		PP_2361	0.85	-0.1
2,693,579	-		PP_2361	0.85	+0.0
2,693,579	-		PP_2361	0.85	+0.2
2,693,825	+				-0.8