Strain Fitness in Pseudomonas putida KT2440 around PP_2357

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
2,689,671	+		PP_2356	0.64	+0.5
2,689,672	-		PP_2356	0.64	+0.0
2,689,672	-		PP_2356	0.64	+0.5
2,689,672	-		PP_2356	0.64	+0.6
2,689,692	-		PP_2356	0.65	+1.3
2,689,696	+		PP_2356	0.65	-1.3
2,689,697	-		PP_2356	0.65	-0.2
2,689,697	-		PP_2356	0.65	-0.3
2,689,697	-		PP_2356	0.65	+0.4
2,689,773	+				+1.2
2,689,889	+		PP_2356	0.74	+0.8
2,690,003	-		PP_2356	0.79	+0.8
2,690,049	+		PP_2356	0.81	+0.0
2,690,052	+		PP_2356	0.81	+0.6
2,690,111	+		PP_2356	0.84	+0.8
2,690,491	+				+0.7
2,690,492	-				+0.2
2,690,602	+				+0.7
2,690,602	+				+1.6
2,690,643	+				+0.8
2,690,644	-				+0.6
2,690,644	-				+0.0
2,690,644	-				-0.8
2,690,661	-				+0.6
2,690,690	+				+1.0
2,690,690	+				+0.4
2,690,721	-		PP_2357	0.10	-0.3
2,690,880	-		PP_2357	0.37	+0.3
2,690,986	-		PP_2357	0.55	-0.2
2,691,037	-		PP_2357	0.63	+0.7
2,691,085	-		PP_2357	0.71	-0.5
2,691,174	+		PP_2357	0.86	+2.3
2,691,175	-		PP_2357	0.87	+1.2
2,691,175	-		PP_2357	0.87	+0.2
2,691,175	-		PP_2357	0.87	+0.3
2,691,182	+		PP_2357	0.88	+2.3
2,691,220	-				+0.8
2,691,264	+				+1.4
2,691,576	-		PP_2358	0.54	+0.9
2,691,643	-		PP_2358	0.67	+0.2
2,691,710	+		PP_2358	0.79	+1.5
2,691,711	-		PP_2358	0.79	+0.8
2,691,741	+		PP_2358	0.85	+1.5
2,691,742	-		PP_2358	0.85	+0.3
2,691,742	-		PP_2358	0.85	+0.2
2,691,742	-		PP_2358	0.85	-0.6
2,691,742	-		PP_2358	0.85	-0.3
2,691,742	-		PP_2358	0.85	+0.1
2,691,751	+		PP_2358	0.87	+1.4
2,692,100	+		PP_2359	0.49	+1.2
2,692,100	+		PP_2359	0.49	-0.4
2,692,100	+		PP_2359	0.49	+1.2
2,692,105	+		PP_2359	0.50	+0.2
2,692,105	+		PP_2359	0.50	-0.4
2,692,105	+		PP_2359	0.50	+0.1
2,692,106	-		PP_2359	0.50	-0.9
2,692,193	-		PP_2359	0.66	+0.2
2,692,198	-		PP_2359	0.67	-0.6
2,692,198	-		PP_2359	0.67	-0.5