Strain Fitness in Pseudomonas putida KT2440 around PP_2008

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
2,277,912	+		PP_2007	0.46	-0.3
2,277,912	+		PP_2007	0.46	-1.1
2,277,912	+		PP_2007	0.46	-0.7
2,277,913	-		PP_2007	0.46	-0.1
2,277,985	+		PP_2007	0.52	-0.1
2,277,989	+		PP_2007	0.52	-1.9
2,277,989	+		PP_2007	0.52	-0.2
2,277,990	-		PP_2007	0.52	+0.7
2,278,023	+		PP_2007	0.55	+0.5
2,278,023	+		PP_2007	0.55	-1.2
2,278,023	+		PP_2007	0.55	-0.0
2,278,023	+		PP_2007	0.55	+0.2
2,278,023	+		PP_2007	0.55	+0.1
2,278,024	-				+1.7
2,278,029	+		PP_2007	0.55	-0.3
2,278,029	+		PP_2007	0.55	-0.7
2,278,029	+		PP_2007	0.55	-1.3
2,278,029	+		PP_2007	0.55	-0.4
2,278,029	+		PP_2007	0.55	+0.7
2,278,030	-		PP_2007	0.55	+0.0
2,278,030	-		PP_2007	0.55	+0.1
2,278,030	-		PP_2007	0.55	+1.5
2,278,030	-		PP_2007	0.55	+1.2
2,278,030	-		PP_2007	0.55	-0.5
2,278,030	-		PP_2007	0.55	-0.5
2,278,030	-		PP_2007	0.55	+0.5
2,278,096	+		PP_2007	0.61	-0.3
2,278,097	-		PP_2007	0.61	-0.3
2,278,109	+		PP_2007	0.62	-0.4
2,278,110	-		PP_2007	0.62	+0.1
2,278,128	+		PP_2007	0.63	+0.3
2,278,128	+		PP_2007	0.63	-0.8
2,278,129	-		PP_2007	0.63	-0.2
2,278,169	+		PP_2007	0.67	+0.2
2,278,169	+		PP_2007	0.67	+1.6
2,278,195	+		PP_2007	0.69	-0.8
2,278,195	+		PP_2007	0.69	-0.6
2,278,382	+		PP_2007	0.84	+0.2
2,278,382	+		PP_2007	0.84	+0.1
2,278,382	+		PP_2007	0.84	-0.2
2,278,382	+		PP_2007	0.84	-0.2
2,278,383	-		PP_2007	0.84	-1.0
2,278,383	-		PP_2007	0.84	+0.4
2,278,383	-		PP_2007	0.84	+0.2
2,278,383	-		PP_2007	0.84	-1.3
2,278,383	-		PP_2007	0.84	+1.0
2,278,384	+		PP_2007	0.84	-0.8
2,278,384	+		PP_2007	0.84	+0.8
2,278,384	+		PP_2007	0.84	-1.0
2,278,384	+		PP_2007	0.84	+0.3
2,278,385	-		PP_2007	0.84	-0.1
2,278,385	-		PP_2007	0.84	+0.1
2,278,385	-		PP_2007	0.84	+0.8
2,278,479	+				-0.5
2,278,479	+				-0.5
2,278,605	+				+0.5
2,278,718	-				-0.3
2,278,718	-				-0.1
2,278,720	-				-0.6
2,278,779	+				-2.2
2,278,822	+				-0.5
2,278,823	-				-0.2
2,278,823	-				+0.2
2,278,823	-				+0.3
2,278,956	+				+0.2
2,278,956	+				-0.3
2,279,041	+				+0.0
2,279,042	-				+1.4
2,279,042	-				+0.7
2,279,119	+		PP_2008	0.12	+0.6
2,279,120	-		PP_2008	0.12	+0.8
2,279,219	+		PP_2008	0.17	-0.1
2,279,242	+		PP_2008	0.18	-0.6
2,279,265	+		PP_2008	0.19	-0.3
2,279,265	+		PP_2008	0.19	-1.1
2,279,265	+		PP_2008	0.19	+0.2
2,279,266	-		PP_2008	0.19	-0.9
2,279,413	+		PP_2008	0.27	-0.8
2,279,413	+		PP_2008	0.27	+0.3
2,279,414	-		PP_2008	0.27	-0.9
2,279,414	-		PP_2008	0.27	+0.2
2,279,414	-		PP_2008	0.27	-2.0
2,279,683	-		PP_2008	0.39	+0.6
2,279,949	+		PP_2008	0.52	-0.7
2,279,949	+		PP_2008	0.52	-0.4
2,279,950	-		PP_2008	0.52	+0.6
2,280,016	+		PP_2008	0.55	-1.3
2,280,017	-		PP_2008	0.56	+0.2
2,280,017	-		PP_2008	0.56	+0.2
2,280,026	+		PP_2008	0.56	-0.7
2,280,026	+		PP_2008	0.56	-0.3
2,280,030	+		PP_2008	0.56	-1.4
2,280,031	-		PP_2008	0.56	-1.3
2,280,031	-		PP_2008	0.56	-0.5
2,280,031	-		PP_2008	0.56	-0.3
2,280,370	+		PP_2008	0.72	-0.0
2,280,435	+		PP_2008	0.76	-1.1
2,280,436	-		PP_2008	0.76	-0.7
2,280,458	-		PP_2008	0.77	+0.6
2,280,595	+		PP_2008	0.83	-0.8
2,280,595	+		PP_2008	0.83	+0.6
2,280,596	-		PP_2008	0.83	-0.0
2,280,596	-		PP_2008	0.83	+0.0
2,280,596	-		PP_2008	0.83	-0.8
2,280,709	+		PP_2008	0.89	-1.3
2,281,059	+				+0.0
2,281,142	-				-0.4
2,281,166	+				+0.5
2,281,186	+				+0.3
2,281,186	+				-1.8
2,281,186	+				-0.4
2,281,187	-				-0.3
2,281,187	-				+0.2
2,281,315	+		PP_2009	0.15	+0.2
2,281,315	+		PP_2009	0.15	+0.0
2,281,316	-		PP_2009	0.15	+0.5
2,281,516	+		PP_2009	0.38	+1.5
2,281,727	+		PP_2009	0.61	+0.9
2,281,727	+		PP_2009	0.61	+0.6
2,281,728	-		PP_2009	0.61	-0.2
2,281,745	-		PP_2009	0.63	+0.0
2,281,853	-		PP_2009	0.75	-0.9
2,281,853	-		PP_2009	0.75	-1.1
2,281,897	+		PP_2009	0.80	-0.6
2,281,897	+		PP_2009	0.80	-0.2
2,281,897	+		PP_2009	0.80	+1.1
2,281,897	+		PP_2009	0.80	+0.5
2,281,897	+		PP_2009	0.80	-0.0
2,281,898	-		PP_2009	0.80	-1.0
2,281,898	-		PP_2009	0.80	+0.2