Strain Fitness in Pseudomonas putida KT2440 around PP_1813

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
2,039,097	+		PP_1811	0.66	+0.2
2,039,097	+				+3.4
2,039,098	-		PP_1811	0.67	-1.2
2,039,098	-		PP_1811	0.67	-0.2
2,039,098	-		PP_1811	0.67	-0.6
2,039,126	+		PP_1811	0.69	-0.2
2,039,126	+		PP_1811	0.69	-0.1
2,039,127	-		PP_1811	0.69	+0.6
2,039,151	+		PP_1811	0.71	-0.6
2,039,151	+		PP_1811	0.71	+0.1
2,039,154	+		PP_1811	0.71	-0.5
2,039,154	+		PP_1811	0.71	+0.6
2,039,155	-		PP_1811	0.72	+0.5
2,039,155	-		PP_1811	0.72	+0.5
2,039,155	-		PP_1811	0.72	-0.2
2,039,155	-		PP_1811	0.72	+0.3
2,039,307	+		PP_1811	0.85	+0.2
2,039,336	+		PP_1811	0.87	+1.0
2,039,581	-				+0.4
2,039,632	+		PP_1812	0.15	-0.3
2,039,688	+		PP_1812	0.43	+0.2
2,039,689	-		PP_1812	0.44	-0.6
2,039,811	+				+0.2
2,039,820	-				-0.1
2,039,917	-				+1.1
2,040,072	+		PP_1813	0.51	-0.4
2,040,120	+		PP_1813	0.65	-1.6
2,040,121	-		PP_1813	0.65	-0.1
2,040,189	-		PP_1813	0.86	-0.8
2,040,235	+				+0.9
2,040,235	+				+0.9
2,040,236	-				+1.0
2,040,313	-		PP_1814	0.23	+0.3
2,040,313	-		PP_1814	0.23	-2.1
2,040,322	+		PP_1814	0.29	-1.7
2,040,322	+		PP_1814	0.29	-0.1
2,040,322	+		PP_1814	0.29	-0.8
2,040,323	-		PP_1814	0.29	+0.4
2,040,409	+		PP_1814	0.80	-0.1
2,040,409	+		PP_1814	0.80	+2.2
2,040,431	+				-0.5
2,040,454	+				+0.1
2,040,477	+				-0.4
2,040,517	+				-0.2
2,040,517	+				-1.7
2,040,517	+				-0.5
2,040,518	-				+0.6
2,040,518	-				+0.3
2,040,518	-				-0.5
2,040,520	-				-0.9