Strain Fitness in Pseudomonas putida KT2440 around PP_1676

Experiment: Cholinium lysinate 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholinium lysinate 10 vol%
1,869,737	+		PP_1674	0.86	-0.4
1,869,738	-		PP_1674	0.86	-1.2
1,869,918	+		PP_1675	0.12	+0.2
1,869,919	-		PP_1675	0.12	+0.3
1,870,046	-		PP_1675	0.25	+0.4
1,870,357	+		PP_1675	0.59	+0.9
1,870,420	+		PP_1675	0.66	-0.3
1,870,420	+		PP_1675	0.66	+0.2
1,870,420	+		PP_1675	0.66	-0.2
1,870,420	+		PP_1675	0.66	+0.2
1,870,420	+		PP_1675	0.66	-0.1
1,870,420	+		PP_1675	0.66	-0.5
1,870,420	+		PP_1675	0.66	-0.6
1,870,420	+		PP_1675	0.66	-0.0
1,870,421	-		PP_1675	0.66	-0.0
1,870,421	-		PP_1675	0.66	+1.5
1,870,421	-		PP_1675	0.66	+0.1
1,870,422	+		PP_1675	0.66	-0.0
1,870,422	+		PP_1675	0.66	-0.5
1,870,423	-		PP_1675	0.66	-0.2
1,870,423	-		PP_1675	0.66	-1.4
1,870,423	-		PP_1675	0.66	-1.0
1,870,424	+		PP_1675	0.66	+0.7
1,870,424	+		PP_1675	0.66	-0.2
1,870,425	-		PP_1675	0.66	-0.6
1,870,425	-		PP_1675	0.66	+0.2
1,870,425	-		PP_1675	0.66	-0.3
1,870,425	-		PP_1675	0.66	-0.8
1,870,450	+		PP_1675	0.69	-0.6
1,870,450	+		PP_1675	0.69	-1.7
1,870,451	-		PP_1675	0.69	-2.2
1,870,451	-		PP_1675	0.69	+1.0
1,870,451	-		PP_1675	0.69	-0.6
1,870,588	+		PP_1675	0.84	+0.5
1,870,589	-		PP_1675	0.84	-3.2
1,870,589	-		PP_1675	0.84	+0.7
1,870,720	+				+0.2
1,870,720	+				+0.5
1,870,720	+				+0.8
1,870,720	+				+0.3
1,870,720	+				+0.2
1,870,721	-				+0.4
1,870,721	-				-0.8
1,870,721	-				-0.3
1,870,721	-				-2.0
1,870,722	+				+0.2
1,870,769	+				-0.5
1,870,770	-				+0.8
1,870,907	+		PP_1676	0.18	-2.2
1,870,908	-		PP_1676	0.18	+0.5
1,870,910	+		PP_1676	0.18	+0.4
1,870,911	-		PP_1676	0.19	-1.3
1,870,978	+		PP_1676	0.25	-0.4
1,870,978	+		PP_1676	0.25	-0.1
1,870,979	-		PP_1676	0.25	-0.3
1,870,979	-		PP_1676	0.25	-2.1
1,870,979	-		PP_1676	0.25	-0.6
1,871,013	-		PP_1676	0.29	-1.5
1,871,027	+		PP_1676	0.30	-2.4
1,871,028	-		PP_1676	0.30	+0.3
1,871,525	-		PP_1676	0.80	-1.2
1,871,550	-		PP_1676	0.83	+0.4
1,871,550	-		PP_1676	0.83	+0.6
1,871,558	-		PP_1676	0.84	-0.8
1,871,916	-		PP_1677	0.14	+1.1
1,872,034	-		PP_1677	0.22	-1.0
1,872,034	-		PP_1677	0.22	-0.2
1,872,388	+		PP_1677	0.46	-0.3
1,872,462	-		PP_1677	0.51	+0.6
1,872,462	-		PP_1677	0.51	+0.6
1,872,696	+		PP_1677	0.67	-0.7